2B0Z

Crystal structure of the protein-protein complex between F82I cytochrome c and cytochrome c peroxidase


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.346

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 43.802α = 90
b = 51.989β = 90
c = 183.669γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray95CCDADSC QUANTUM 3152004-04-21MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONNSLS BEAMLINE X251.1NSLSX25

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2.720119476101000.2630.2630.2620.289RANDOM28.553
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.250.74-2.98
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg42.011
r_dihedral_angle_4_deg29.733
r_dihedral_angle_3_deg24.06
r_scangle_it8.1
r_scbond_it5.527
r_mcangle_it3.379
r_angle_refined_deg2.266
r_mcbond_it2.028
r_dihedral_angle_1_deg1.566
r_symmetry_hbond_refined0.375
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg42.011
r_dihedral_angle_4_deg29.733
r_dihedral_angle_3_deg24.06
r_scangle_it8.1
r_scbond_it5.527
r_mcangle_it3.379
r_angle_refined_deg2.266
r_mcbond_it2.028
r_dihedral_angle_1_deg1.566
r_symmetry_hbond_refined0.375
r_symmetry_vdw_refined0.261
r_nbd_refined0.188
r_xyhbond_nbd_refined0.183
r_chiral_restr0.169
r_gen_planes_refined0.021
r_bond_refined_d0.02
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3214
Nucleic Acid Atoms
Solvent Atoms107
Heterogen Atoms86

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
REFMACrefinement
PDB_EXTRACTdata extraction
HKL-2000data reduction
AMoREphasing