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Structure of PrgX Y153C mutant
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 5 298 PEG 4000, citrate-phophate, pH 5.0, VAPOR DIFFUSION, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.9 57.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 82.076 α = 90 b = 82.076 β = 90 c = 263.48 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD 2004-03-03 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X25 0.97940 NSLS X25
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3 45 95.3 47514 47514
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 3 20 37461 34518 1792 100 0.24156 0.23944 0.27962 0.2416 RANDOM 74.315
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 9.38 -1.26 -8.12
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.486 r_dihedral_angle_3_deg 21.495 r_dihedral_angle_4_deg 19.94 r_dihedral_angle_1_deg 6.061 r_scangle_it 1.908 r_angle_refined_deg 1.708 r_scbond_it 1.238 r_angle_other_deg 1.097 r_mcangle_it 0.994 r_mcbond_it 0.867
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 40.486 r_dihedral_angle_3_deg 21.495 r_dihedral_angle_4_deg 19.94 r_dihedral_angle_1_deg 6.061 r_scangle_it 1.908 r_angle_refined_deg 1.708 r_scbond_it 1.238 r_angle_other_deg 1.097 r_mcangle_it 0.994 r_mcbond_it 0.867 r_nbd_refined 0.238 r_nbtor_refined 0.206 r_symmetry_vdw_other 0.202 r_symmetry_vdw_refined 0.175 r_nbd_other 0.173 r_mcbond_other 0.115 r_nbtor_other 0.101 r_chiral_restr 0.094 r_symmetry_hbond_refined 0.031 r_xyhbond_nbd_refined 0.025 r_bond_refined_d 0.019 r_gen_planes_refined 0.006 r_bond_other_d 0.004 r_gen_planes_other 0.003 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 9989 Nucleic Acid Atoms Solvent Atoms 37 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction CNS refinement