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Crystal Structure Analysis Of A 2-O-[2-(methoxy)ethyl]-2-thiothymidine Modified Oligodeoxynucleotide Duplex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 287 Mini Screen, VAPOR DIFFUSION, HANGING DROP, temperature 287K
Crystal Properties Matthews coefficient Solvent content 1.96 37.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 25.251 α = 90 b = 45.002 β = 90 c = 44.971 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 103 2003-03-07 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 5ID-B .9873 APS 5ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.61 12.9 6642
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.61 12.9 6627 6304 338 95.13 0.19589 0.19589 0.19559 0.2021 0.2017 0.262 RANDOM 8.976
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.07 0.01 -0.08
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 17.014 r_sphericity_bonded 4.893 r_scangle_it 4.235 r_scbond_it 3.703 r_rigid_bond_restr 2.856 r_angle_refined_deg 2.534 r_angle_other_deg 1.629 r_nbd_other 0.373 r_symmetry_hbond_refined 0.343 r_nbd_refined 0.331
RMS Deviations Key Refinement Restraint Deviation r_sphericity_free 17.014 r_sphericity_bonded 4.893 r_scangle_it 4.235 r_scbond_it 3.703 r_rigid_bond_restr 2.856 r_angle_refined_deg 2.534 r_angle_other_deg 1.629 r_nbd_other 0.373 r_symmetry_hbond_refined 0.343 r_nbd_refined 0.331 r_xyhbond_nbd_refined 0.321 r_nbtor_other 0.2 r_symmetry_vdw_other 0.195 r_chiral_restr 0.13 r_symmetry_vdw_refined 0.091 r_bond_refined_d 0.012 r_gen_planes_other 0.011 r_gen_planes_refined 0.009 r_bond_other_d 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms Nucleic Acid Atoms 414 Solvent Atoms 154 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MAR345 data collection XDS data scaling AMoRE phasing