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oxoG-modified Postinsertion Binary Complex
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 293 PEG 4000, HEPES-sodium, calcium acetate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
Crystal Properties Matthews coefficient Solvent content 3.2 61.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 73.218 α = 90 b = 101.024 β = 97.16 c = 84.925 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-11-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-ID-B 0.9810 APS 14-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.65 20 97.5 0.082 2.2 34610 34610
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.65 2.73 80 0.504 2.1 2345
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.65 20 29331 29331 3290 91.76 0.23792 0.23792 0.23233 0.2137 0.28686 0.2611 RANDOM 14.504
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.93 -1.26 -0.25 -0.99
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.651 r_scangle_it 1.712 r_angle_refined_deg 1.456 r_scbond_it 0.993 r_angle_other_deg 0.816 r_mcangle_it 0.629 r_metal_ion_refined 0.345 r_mcbond_it 0.318 r_symmetry_hbond_refined 0.31 r_xyhbond_nbd_refined 0.252
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.651 r_scangle_it 1.712 r_angle_refined_deg 1.456 r_scbond_it 0.993 r_angle_other_deg 0.816 r_mcangle_it 0.629 r_metal_ion_refined 0.345 r_mcbond_it 0.318 r_symmetry_hbond_refined 0.31 r_xyhbond_nbd_refined 0.252 r_symmetry_vdw_other 0.234 r_nbd_other 0.213 r_nbd_refined 0.203 r_symmetry_vdw_refined 0.114 r_chiral_restr 0.098 r_nbtor_other 0.079 r_bond_refined_d 0.01 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 5478 Nucleic Acid Atoms 1258 Solvent Atoms 181 Heterogen Atoms 4
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing