2ASF

Crystal structure of the conserved hypothetical protein Rv2074 from Mycobacterium tuberculosis 1.6 A


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP529820% PEG 4000, 0.2M sodium citrate, 3% dioxane, pH 5.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
238.4

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 73.395α = 90
b = 73.395β = 90
c = 44.794γ = 90
Symmetry
Space GroupP 43 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 42004-07-29MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONALS BEAMLINE 8.3.10.979571, 1.019691, 1.115869ALS8.3.1

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.638.2497.61668116283
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.61.6687.8

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.638.241550379297.580.179920.178660.20397RANDOM14.561
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.020.02-0.05
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.585
r_dihedral_angle_4_deg16.189
r_dihedral_angle_3_deg9.91
r_dihedral_angle_1_deg5.793
r_scangle_it3.396
r_scbond_it2.345
r_mcangle_it1.36
r_angle_refined_deg1.271
r_mcbond_it0.704
r_nbtor_refined0.309
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg29.585
r_dihedral_angle_4_deg16.189
r_dihedral_angle_3_deg9.91
r_dihedral_angle_1_deg5.793
r_scangle_it3.396
r_scbond_it2.345
r_mcangle_it1.36
r_angle_refined_deg1.271
r_mcbond_it0.704
r_nbtor_refined0.309
r_nbd_refined0.209
r_symmetry_vdw_refined0.162
r_xyhbond_nbd_refined0.154
r_symmetry_hbond_refined0.128
r_symmetry_metal_ion_refined0.112
r_metal_ion_refined0.095
r_chiral_restr0.084
r_bond_refined_d0.021
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms963
Nucleic Acid Atoms
Solvent Atoms175
Heterogen Atoms27

Software

Software
Software NamePurpose
REFMACrefinement
Blu-Icedata collection
SCALEPACKdata scaling
SOLVEphasing