☰ Navigation Tabs
Crystal Structure of the Complex of Phospholipase A2 with a natural compound atropine at 1.2 A resolution
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7 298 ammonium sulphate and PEG 4000, pH 7.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.4 48
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 52.35 α = 90 b = 52.35 β = 90 c = 47.828 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 200 CCD MARRESEARCH Mirorr 2004-04-20 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.80 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.23 51.99 100 36667 36667
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.23 1.26 100
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.23 51.99 36667 36667 767 99.82 0.2 0.18909 0.18877 0.20444 RANDOM 14.146
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.19 0.19 -0.39
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.451 r_dihedral_angle_1_deg 3.975 r_scangle_it 2.164 r_angle_refined_deg 1.946 r_scbond_it 1.399 r_mcangle_it 1.191 r_angle_other_deg 0.79 r_mcbond_it 0.635 r_nbd_refined 0.435 r_symmetry_hbond_refined 0.235
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 17.451 r_dihedral_angle_1_deg 3.975 r_scangle_it 2.164 r_angle_refined_deg 1.946 r_scbond_it 1.399 r_mcangle_it 1.191 r_angle_other_deg 0.79 r_mcbond_it 0.635 r_nbd_refined 0.435 r_symmetry_hbond_refined 0.235 r_nbd_other 0.213 r_chiral_restr 0.211 r_xyhbond_nbd_refined 0.21 r_symmetry_vdw_refined 0.2 r_symmetry_vdw_other 0.162 r_bond_refined_d 0.008 r_gen_planes_refined 0.006 r_gen_planes_other 0.002 r_bond_other_d 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 943 Nucleic Acid Atoms Solvent Atoms 247 Heterogen Atoms 41
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling AMoRE phasing