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Metallo beta lactamase L1 from Stenotrophomonas maltophilia complexed with hydrolyzed moxalactam
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1SML PDB ENTRY 1SML
Crystallization Crystal Properties Matthews coefficient Solvent content 2.7 54.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 105.024 α = 90 b = 105.024 β = 90 c = 98.23 γ = 120
Symmetry Space Group P 64 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2001-11-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SRS BEAMLINE PX14.2 SRS PX14.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 30 93.6 0.057 23.69 4.35 33459
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.74 78.6 0.246 2.65
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1SML 1.7 28.99 29826 1559 88 0.173 0.171 0.1706 0.2 0.2006 RANDOM 20.49
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.44 -0.22 -0.44 0.65
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.872 r_dihedral_angle_4_deg 19.522 r_dihedral_angle_3_deg 14.074 r_dihedral_angle_1_deg 6.179 r_rigid_bond_restr 3.905 r_sphericity_free 3.875 r_scangle_it 3.623 r_scbond_it 3.577 r_sphericity_bonded 3.38 r_mcangle_it 1.319
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.872 r_dihedral_angle_4_deg 19.522 r_dihedral_angle_3_deg 14.074 r_dihedral_angle_1_deg 6.179 r_rigid_bond_restr 3.905 r_sphericity_free 3.875 r_scangle_it 3.623 r_scbond_it 3.577 r_sphericity_bonded 3.38 r_mcangle_it 1.319 r_angle_refined_deg 1.282 r_mcbond_it 0.871 r_nbtor_refined 0.303 r_nbd_refined 0.203 r_symmetry_vdw_refined 0.184 r_symmetry_hbond_refined 0.139 r_xyhbond_nbd_refined 0.121 r_chiral_restr 0.082 r_metal_ion_refined 0.03 r_bond_refined_d 0.011 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2001 Nucleic Acid Atoms Solvent Atoms 330 Heterogen Atoms 37
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing