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Structure of S. cerevisiae His6 protein
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.6 298 PEG4000, sodium citrate, MgCl2, pH 4.6, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties Matthews coefficient Solvent content 2.8 45
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 101.863 α = 90 b = 71.427 β = 104.71 c = 40.57 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-09-14 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE ID14-1 0.933 ESRF ID14-1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.25 20 92.4 0.05 18.89 293459 270881
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.25 1.3 100 88.1 0.639 2.85
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.3 20 65836 3307 95.48 0.193 0.191 0.1875 0.216 0.2129 RANDOM 22.76
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.36 -0.95 -0.29 0.18
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.874 r_dihedral_angle_4_deg 13.049 r_dihedral_angle_3_deg 11.471 r_rigid_bond_restr 5.382 r_dihedral_angle_1_deg 5.109 r_scbond_it 4.566 r_scangle_it 3.951 r_sphericity_bonded 3.08 r_sphericity_free 2.616 r_mcangle_it 1.602
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.874 r_dihedral_angle_4_deg 13.049 r_dihedral_angle_3_deg 11.471 r_rigid_bond_restr 5.382 r_dihedral_angle_1_deg 5.109 r_scbond_it 4.566 r_scangle_it 3.951 r_sphericity_bonded 3.08 r_sphericity_free 2.616 r_mcangle_it 1.602 r_angle_refined_deg 1.117 r_mcbond_it 1.014 r_nbtor_refined 0.308 r_symmetry_vdw_refined 0.262 r_nbd_refined 0.188 r_xyhbond_nbd_refined 0.111 r_symmetry_hbond_refined 0.105 r_chiral_restr 0.082 r_bond_refined_d 0.007 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1876 Nucleic Acid Atoms Solvent Atoms 344 Heterogen Atoms 26
Software Software Software Name Purpose XSCALE data scaling REFMAC refinement PDB_EXTRACT data extraction XDS data reduction SHARP phasing