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2.5A X-ray Structure of Engineered OspA protein
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1OSP PDB ENTRY 1OSP
Crystallization Crystal Properties Matthews coefficient Solvent content 2.9 57
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 48.547 α = 90 b = 55.33 β = 104.08 c = 70.361 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH mirrors 2004-10-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 14-ID-B 0.97946 APS 14-ID-B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 30 99.9 0.075 9.2 5.4 11367 14271 61.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB ENTRY 1OSP 2.5 20 11367 11367 1287 99.89 0.24572 0.24572 0.24237 0.2446 0.27556 0.2822 RANDOM 20.892
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 7.94 -2.61 -6 -3.21
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.03 r_dihedral_angle_4_deg 19.65 r_dihedral_angle_3_deg 18.176 r_dihedral_angle_1_deg 7.229 r_scangle_it 4.718 r_scbond_it 3.291 r_mcangle_it 1.945 r_mcbond_it 1.562 r_angle_refined_deg 1.481 r_angle_other_deg 0.952
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.03 r_dihedral_angle_4_deg 19.65 r_dihedral_angle_3_deg 18.176 r_dihedral_angle_1_deg 7.229 r_scangle_it 4.718 r_scbond_it 3.291 r_mcangle_it 1.945 r_mcbond_it 1.562 r_angle_refined_deg 1.481 r_angle_other_deg 0.952 r_mcbond_other 0.329 r_symmetry_vdw_refined 0.251 r_symmetry_vdw_other 0.234 r_nbd_refined 0.227 r_nbd_other 0.197 r_xyhbond_nbd_refined 0.171 r_symmetry_hbond_refined 0.143 r_nbtor_other 0.085 r_chiral_restr 0.077 r_bond_refined_d 0.013 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2223 Nucleic Acid Atoms Solvent Atoms 52 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing