2A19

PKR kinase domain- eIF2alpha- AMP-PNP complex.


X-RAY DIFFRACTION

Crystallization

Crystal Properties
Matthews coefficientSolvent content
2.447.6

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 64.659α = 90
b = 48.75β = 98.44
c = 133.434γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 3152004-07-29MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 14-BM-CAPS14-BM-C

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Sym I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.53098.70.05127.82895628956
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R-Sym I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.52.698.60.363.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT2A1A2.527.3324672272295.930.233940.228020.28644RANDOM60.417
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.03-1.462.07-4.53
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.64
r_dihedral_angle_4_deg18.605
r_dihedral_angle_3_deg18.54
r_dihedral_angle_1_deg5.581
r_scangle_it2.048
r_angle_refined_deg1.327
r_scbond_it1.253
r_mcangle_it0.955
r_mcbond_it0.536
r_nbtor_refined0.305
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.64
r_dihedral_angle_4_deg18.605
r_dihedral_angle_3_deg18.54
r_dihedral_angle_1_deg5.581
r_scangle_it2.048
r_angle_refined_deg1.327
r_scbond_it1.253
r_mcangle_it0.955
r_mcbond_it0.536
r_nbtor_refined0.305
r_symmetry_vdw_refined0.258
r_nbd_refined0.21
r_symmetry_hbond_refined0.177
r_xyhbond_nbd_refined0.157
r_chiral_restr0.089
r_metal_ion_refined0.032
r_bond_refined_d0.01
r_gen_planes_refined0.004
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5073
Nucleic Acid Atoms
Solvent Atoms72
Heterogen Atoms71

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing