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Structure of Cannabidiolic acid synthase(CBDAS) in complex with FAD
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 298 0.1 M Tris-HCl pH 8.5; 25% (w/v) PEG 3350
Crystal Properties Matthews coefficient Solvent content 2.26 45.63
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 63.025 α = 90 b = 65.996 β = 90 c = 135.559 γ = 90
Symmetry Space Group P 2 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 PIXEL DECTRIS EIGER2 XE 16M 2025-07-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 59.41 100 0.14 0.06 1 11.7 13.5 63060 17
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.7 1.73 1.43 0.58 0.73 1.9
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.7 59.41 60006 2988 99.98 0.15434 0.15283 0.1672 0.18434 0.1945 RANDOM 19.702
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.85 -0.32 -0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 11.698 r_dihedral_angle_2_deg 6.957 r_dihedral_angle_1_deg 6.693 r_long_range_B_refined 5.815 r_long_range_B_other 5.688 r_scangle_other 4.8 r_scbond_it 3.187 r_scbond_other 3.186 r_mcangle_it 2.861 r_mcangle_other 2.861
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 11.698 r_dihedral_angle_2_deg 6.957 r_dihedral_angle_1_deg 6.693 r_long_range_B_refined 5.815 r_long_range_B_other 5.688 r_scangle_other 4.8 r_scbond_it 3.187 r_scbond_other 3.186 r_mcangle_it 2.861 r_mcangle_other 2.861 r_mcbond_it 1.971 r_mcbond_other 1.966 r_angle_refined_deg 1.821 r_angle_other_deg 0.718 r_chiral_restr 0.202 r_bond_refined_d 0.01 r_gen_planes_refined 0.01 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3943 Nucleic Acid Atoms Solvent Atoms 371 Heterogen Atoms 105
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction SCALA data scaling MOLREP phasing