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Structure of Tetrahydrocannabinolic acid synthase(THCAS) in complex with FAD
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.2 298 1.4 M Na phosphate monobasic monohydrate; potassium phosphate dibasic pH8.2
Crystal Properties Matthews coefficient Solvent content 2.81 56.3
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 102.408 α = 90 b = 102.408 β = 90 c = 133.366 γ = 90
Symmetry Space Group P 4 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 120 PIXEL DECTRIS EIGER2 XE 16M 2024-10-04 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.9763 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.43 66.68 100 0.09 0.03 1 24.4 26.5 27448 57
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.43 2.52 1.41 0.39 0.97 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.43 63.72 26068 1317 99.84 0.20006 0.1971 0.2038 0.25889 0.2556 RANDOM 67
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.89 3.89 -7.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.913 r_dihedral_angle_2_deg 11.975 r_long_range_B_other 11.646 r_long_range_B_refined 11.642 r_scangle_other 9.966 r_mcangle_it 9.854 r_mcangle_other 9.854 r_dihedral_angle_1_deg 7.302 r_mcbond_it 7.28 r_scbond_it 7.274
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.913 r_dihedral_angle_2_deg 11.975 r_long_range_B_other 11.646 r_long_range_B_refined 11.642 r_scangle_other 9.966 r_mcangle_it 9.854 r_mcangle_other 9.854 r_dihedral_angle_1_deg 7.302 r_mcbond_it 7.28 r_scbond_it 7.274 r_scbond_other 7.272 r_mcbond_other 7.267 r_angle_refined_deg 1.761 r_angle_other_deg 0.662 r_chiral_restr 0.209 r_bond_refined_d 0.008 r_gen_planes_refined 0.008 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_dihedral_angle_4_deg r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3946 Nucleic Acid Atoms Solvent Atoms 80 Heterogen Atoms 95
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction XDS data reduction SCALA data scaling MOLREP phasing