29UT | pdb_000029ut

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	6BA4

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	PEG, HEPES

Crystal Properties
Matthews coefficient	Solvent content
2.47	50.19

Symmetry
Space Group	P 21 21 21

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS PILATUS 6M-F		2019-06-21	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PETRA III, DESY BEAMLINE P11	1.0332	PETRA III, DESY	P11

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.4	46.27	99.9	0.057	0.062	0.999	15.7	6.5		64350			25.5

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.4	1.48	99.8		1.246	1.355	0.637	1.25

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.4	41.646	64349	2100	99.907	0.131	0.1292	0.1519	0.1781	0.1878	29.922

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
1.546			-1.309		-0.237

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.483
r_dihedral_angle_4_deg	16.511
r_dihedral_angle_3_deg	14.505
r_rigid_bond_restr	14.481
r_mcangle_other	13.807
r_mcangle_it	13.608
r_mcbond_it	13.2
r_lrange_other	12.422
r_lrange_it	12.399
r_scangle_it	11.96

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.483
r_dihedral_angle_4_deg	16.511
r_dihedral_angle_3_deg	14.505
r_rigid_bond_restr	14.481
r_mcangle_other	13.807
r_mcangle_it	13.608
r_mcbond_it	13.2
r_lrange_other	12.422
r_lrange_it	12.399
r_scangle_it	11.96
r_scangle_other	11.957
r_mcbond_other	11.758
r_scbond_it	10.866
r_scbond_other	10.862
r_dihedral_angle_1_deg	7.195
r_angle_refined_deg	1.999
r_angle_other_deg	1.489
r_xyhbond_nbd_other	0.361
r_symmetry_xyhbond_nbd_refined	0.273
r_symmetry_xyhbond_nbd_other	0.267
r_nbd_refined	0.262
r_nbd_other	0.237
r_xyhbond_nbd_refined	0.231
r_symmetry_nbd_other	0.2
r_nbtor_refined	0.184
r_symmetry_nbd_refined	0.136
r_chiral_restr	0.128
r_symmetry_nbtor_other	0.085
r_bond_refined_d	0.018
r_gen_planes_refined	0.012
r_bond_other_d	0.002
r_gen_planes_other	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2253
Nucleic Acid Atoms
Solvent Atoms	270
Heterogen Atoms	51

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.