29OH | pdb_000029oh

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	193L

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	7.5	298	.0 M sodium formate, 0.1 M Hepes buffer pH 7.5

Crystal Properties
Matthews coefficient	Solvent content
1.97	37.54

Symmetry
Space Group	P 43 21 2

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER X 9M		2025-04-16	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID23-2	0.9677	ESRF	ID23-2

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.54	32.65	92.9	0.2	0.995	7.9	15.8		15114

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.54	1.64	42.9		3.965	0.633	1.4	16.2

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	1.54	32.65	15114	799	86.036	0.208	0.2058	0.2136	0.2505	0.2491	23.567

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.075			-0.075		0.149

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	36.686
r_dihedral_angle_4_deg	20.136
r_dihedral_angle_3_deg	15.494
r_dihedral_angle_1_deg	6.691
r_lrange_it	6.165
r_lrange_other	6.077
r_scangle_it	4.15
r_scangle_other	4.147
r_mcangle_it	2.943
r_mcangle_other	2.941

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	36.686
r_dihedral_angle_4_deg	20.136
r_dihedral_angle_3_deg	15.494
r_dihedral_angle_1_deg	6.691
r_lrange_it	6.165
r_lrange_other	6.077
r_scangle_it	4.15
r_scangle_other	4.147
r_mcangle_it	2.943
r_mcangle_other	2.941
r_scbond_it	2.63
r_scbond_other	2.628
r_mcbond_it	1.974
r_mcbond_other	1.966
r_angle_refined_deg	1.63
r_angle_other_deg	1.443
r_xyhbond_nbd_refined	0.26
r_nbd_other	0.25
r_nbd_refined	0.217
r_symmetry_xyhbond_nbd_refined	0.209
r_symmetry_nbd_other	0.195
r_symmetry_nbd_refined	0.171
r_nbtor_refined	0.166
r_xyhbond_nbd_other	0.106
r_symmetry_nbtor_other	0.08
r_chiral_restr	0.074
r_bond_refined_d	0.008
r_gen_planes_refined	0.008
r_gen_planes_other	0.002
r_bond_other_d	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1001
Nucleic Acid Atoms
Solvent Atoms	75
Heterogen Atoms	9

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.