29MM | pdb_000029mm

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	8CBH

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, HANGING DROP	8.5	293	0.2 M ammonium-acetate 18% (w/v) PEG 3350 0.1 M Tris-HCl pH 8.5

Crystal Properties
Matthews coefficient	Solvent content
2.24	45.07

Symmetry
Space Group	P 1 21 1

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	100	PIXEL	DECTRIS EIGER2 X CdTe 16M		2022-10-10	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	ESRF BEAMLINE ID23-1	1.0	ESRF	ID23-1

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2.196	44.243	95.9	0.0998	0.1167	0.0595	0.995	9.83	3.82		51600

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Rpim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
	2.196	2.234	98		0.6288	0.7482	0.3971	0.71	2.17	3.36	2644

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	FREE R-VALUE	2.197	44.243	51573	1351	95.829	0.232	0.2302	0.234	0.2877	0.2845	37.818

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
2.228		0.428	-1.05		-1.243

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.599
r_dihedral_angle_other_3_deg	25.261
r_dihedral_angle_4_deg	16.581
r_dihedral_angle_6_deg	14.844
r_dihedral_angle_3_deg	13.651
r_dihedral_angle_1_deg	6.633
r_lrange_it	4.758
r_lrange_other	4.732
r_mcangle_it	3.095
r_mcangle_other	3.094

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.599
r_dihedral_angle_other_3_deg	25.261
r_dihedral_angle_4_deg	16.581
r_dihedral_angle_6_deg	14.844
r_dihedral_angle_3_deg	13.651
r_dihedral_angle_1_deg	6.633
r_lrange_it	4.758
r_lrange_other	4.732
r_mcangle_it	3.095
r_mcangle_other	3.094
r_scangle_it	2.629
r_scangle_other	2.629
r_mcbond_it	1.818
r_mcbond_other	1.818
r_scbond_it	1.55
r_scbond_other	1.547
r_angle_refined_deg	1.319
r_angle_other_deg	1.124
r_symmetry_xyhbond_nbd_refined	0.158
r_nbd_other	0.155
r_symmetry_nbd_other	0.152
r_nbd_refined	0.151
r_nbtor_refined	0.145
r_symmetry_nbd_refined	0.141
r_xyhbond_nbd_refined	0.123
r_symmetry_nbtor_other	0.067
r_chiral_restr	0.05
r_ncsr_local_group_1	0.037
r_bond_refined_d	0.004
r_gen_planes_refined	0.004
r_bond_other_d	0.003
r_gen_planes_other	0.002

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	8047
Nucleic Acid Atoms
Solvent Atoms	476
Heterogen Atoms	78

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.