☰ Navigation Tabs
Structure of 14-3-3 epsilon in complex with a peptide derived from AMPK gamma 2
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 2BR9
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 20 % w/v Polyethylene glycol 3,350, 100 mM BIS-TRIS Propane pH6.5, 200 mM Sodium fluoride
Crystal Properties Matthews coefficient Solvent content 3.03 59.41
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 85.073 α = 90 b = 118.182 β = 90 c = 65.643 γ = 90
Symmetry Space Group P 21 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2018-09-30 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON DIAMOND BEAMLINE I03 0.976 Diamond I03
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.169 69.05 98.2 0.87 1.1 11.2 35775
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.17 2.24 99 0.573
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.17 69.044 35735 1762 99.894 0.248 0.2455 0.2416 0.2964 0.2946 RANDOM 40.648
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 5.181 -2.014 -3.167
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.92 r_dihedral_angle_6_deg 14.726 r_dihedral_angle_2_deg 9.762 r_lrange_it 9.368 r_scangle_it 7.9 r_dihedral_angle_1_deg 6.493 r_mcangle_it 6.242 r_scbond_it 5.558 r_mcbond_it 4.272 r_angle_refined_deg 2.145
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 16.92 r_dihedral_angle_6_deg 14.726 r_dihedral_angle_2_deg 9.762 r_lrange_it 9.368 r_scangle_it 7.9 r_dihedral_angle_1_deg 6.493 r_mcangle_it 6.242 r_scbond_it 5.558 r_mcbond_it 4.272 r_angle_refined_deg 2.145 r_nbtor_refined 0.312 r_nbd_refined 0.243 r_symmetry_xyhbond_nbd_refined 0.231 r_chiral_restr 0.161 r_xyhbond_nbd_refined 0.142 r_symmetry_nbd_refined 0.112 r_ncsr_local_group_1 0.103 r_bond_refined_d 0.008 r_gen_planes_refined 0.008
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3693 Nucleic Acid Atoms Solvent Atoms 75 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement xia2 data reduction xia2 data scaling PHASER phasing