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structure of InhA from Mycobacterium tuberculosis in complex with 4-(4-((4-butyl-1H-1,2,3-triazol-1-yl)methyl)-2-hydroxyphenoxy)benzaldehyde (compound 5e)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 4TRN
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.8 293 PEG 4000 14 % (w/v)
ADA buffer 0.1 M
Ammonium Acetate 0.1 M
DMSO 5 % (v/v)
NAD+ 1.4 mM
Compound 2.5 mM
Crystal Properties Matthews coefficient Solvent content 2.3 46.59
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 68.07 α = 87.05 b = 75.43 β = 72.03 c = 108.95 γ = 90.06
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 PIXEL DECTRIS PILATUS 6M 2023-03-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALBA BEAMLINE XALOC 0.979261 ALBA XALOC
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.102 103.48 94.5 0.0822 0.0986 0.0538 0.996 10.12 3.22 113237
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Rrim I (All) Rpim I (All) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.102 2.139 96.5 0.5829 0.6954 0.3756 0.673 2.18 3.28 5800
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.102 103.48 113237 5683 94.5 0.2048 0.2034 0.1973 0.2307 0.226 RANDOM 37.15
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.001 -0.9287 0.8527 -2.5847 0.8133 2.5837
RMS Deviations Key Refinement Restraint Deviation t_other_torsion 15.26 t_omega_torsion 3.27 t_angle_deg 0.91 t_bond_d 0.007 t_dihedral_angle_d t_gen_planes t_it t_chiral_improper_torsion t_sum_occupancies t_ideal_dist_contact
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 15725 Nucleic Acid Atoms Solvent Atoms 770 Heterogen Atoms 561
Software Software Software Name Purpose BUSTER refinement autoPROC data processing XSCALE data scaling TRUNCATE data processing Coot model building MOLREP phasing XDS data reduction