27GY | pdb_000027gy

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	3AOS

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	0.1M sodium acetate (pH 5.2), 1.7M ammonium sulfate

Crystal Properties
Matthews coefficient	Solvent content
4.96	75.2

Symmetry
Space Group	H 3 2

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	95	PIXEL	DECTRIS PILATUS 2M		2017-03-04	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PHOTON FACTORY BEAMLINE BL-5A	1.0000	Photon Factory	BL-5A

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.85	100	100	0.048	0.049	44.5	19.6		41938

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Rrim I (All)	CC (Half)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.85	1.9			0.834	0.857	0.936

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.851	36.958	41932	2072	99.957	0.187	0.1861	0.1963	0.2074	0.2159	RANDOM	34.421

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.905	-0.452		-0.905		2.935

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	12.828
r_dihedral_angle_3_deg	11.274
r_lrange_it	6.945
r_lrange_other	6.905
r_dihedral_angle_1_deg	6.323
r_dihedral_angle_2_deg	5.533
r_scangle_it	5.233
r_scangle_other	5.128
r_scbond_it	3.435
r_mcangle_it	3.31

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	12.828
r_dihedral_angle_3_deg	11.274
r_lrange_it	6.945
r_lrange_other	6.905
r_dihedral_angle_1_deg	6.323
r_dihedral_angle_2_deg	5.533
r_scangle_it	5.233
r_scangle_other	5.128
r_scbond_it	3.435
r_mcangle_it	3.31
r_mcangle_other	3.31
r_scbond_other	3.195
r_mcbond_it	2.364
r_mcbond_other	2.362
r_angle_refined_deg	1.366
r_angle_other_deg	0.539
r_nbd_other	0.233
r_nbd_refined	0.214
r_symmetry_nbd_refined	0.212
r_symmetry_nbd_other	0.194
r_nbtor_refined	0.172
r_xyhbond_nbd_refined	0.146
r_symmetry_xyhbond_nbd_refined	0.082
r_symmetry_nbtor_other	0.079
r_chiral_restr	0.075
r_symmetry_xyhbond_nbd_other	0.019
r_bond_refined_d	0.007
r_gen_planes_refined	0.005
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	1715
Nucleic Acid Atoms
Solvent Atoms	186
Heterogen Atoms	47

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.