Experiment: 24TE

X-RAY DIFFRACTION

Initial Refinement Model(s)
Type	Source	Accession Code	Details
experimental model	PDB	24TD

Crystalization Experiments
ID	Method	pH	Temperature	Details
1	VAPOR DIFFUSION, SITTING DROP		293	1.6 M ammonium sulfate, 0.1 M MES pH 6.5, 10% dioxane

Crystal Properties
Matthews coefficient	Solvent content
2.03	39.4

Symmetry
Space Group	P 43 21 2

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray	95	CCD	ADSC QUANTUM 315		2013-10-25	M	SINGLE WAVELENGTH

Radiation Source
ID #	Source	Type	Wavelength List	Synchrotron Site	Beamline
1	SYNCHROTRON	PHOTON FACTORY BEAMLINE BL-5A	1.0000	Photon Factory	BL-5A

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Merge I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	2	100	98.6	0.174	13.3	19.6		29929

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R Merge I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	2	2.07			0.907	4

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (All)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	2	49.675	29764	1507	98.625	0.178	0.1754	0.1849	0.2344	0.2379	RANDOM	31.483

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.084			-0.084		0.168

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.333
r_dihedral_angle_3_deg	11.196
r_dihedral_angle_1_deg	7.409
r_dihedral_angle_2_deg	6.224
r_lrange_it	5.01
r_lrange_other	4.985
r_scangle_it	4.029
r_scangle_other	4.028
r_mcangle_other	2.983
r_mcangle_it	2.981

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_6_deg	15.333
r_dihedral_angle_3_deg	11.196
r_dihedral_angle_1_deg	7.409
r_dihedral_angle_2_deg	6.224
r_lrange_it	5.01
r_lrange_other	4.985
r_scangle_it	4.029
r_scangle_other	4.028
r_mcangle_other	2.983
r_mcangle_it	2.981
r_scbond_it	2.836
r_scbond_other	2.836
r_mcbond_it	2.325
r_mcbond_other	2.325
r_angle_refined_deg	1.452
r_angle_other_deg	0.549
r_symmetry_nbd_other	0.207
r_nbd_refined	0.198
r_nbtor_refined	0.181
r_nbd_other	0.176
r_xyhbond_nbd_refined	0.146
r_symmetry_xyhbond_nbd_refined	0.138
r_symmetry_xyhbond_nbd_other	0.133
r_symmetry_nbd_refined	0.111
r_symmetry_nbtor_other	0.081
r_chiral_restr	0.072
r_gen_planes_refined	0.007
r_bond_refined_d	0.006
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	3547
Nucleic Acid Atoms
Solvent Atoms	224
Heterogen Atoms	74

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729. RCSB PDB uses resources of the National Energy Research Scientific Computing Center (NERSC), a Department of Energy User Facility.

24TE | pdb_000024te