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Crystal structure of sulX in complex with FMN and sulfamethoxypyridazine
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details in silico model AlphaFold
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 7.5 298 24%PEG 500, 1.2 mM Zinc sulfate, 0.1 M MES pH 6.5
Crystal Properties Matthews coefficient Solvent content 3.93 68.69
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 133.916 α = 90 b = 133.916 β = 90 c = 139.504 γ = 120
Symmetry Space Group P 62 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD RAYONIX MX-300 2024-12-23 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSRRC BEAMLINE BL15A1 1 NSRRC BL15A1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) CC (Half) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.09 25 98.9 0.996 22.13 11.3 43884
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) CC (Half) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.09 2.16 0.93 2.17
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 2.09 24.91 41583 2218 98.65 0.18275 0.18048 0.1938 0.22645 0.2352 RANDOM 57.696
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.65 0.82 1.65 -5.35
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.078 r_dihedral_angle_4_deg 21.959 r_dihedral_angle_3_deg 15.567 r_long_range_B_refined 8.985 r_long_range_B_other 8.984 r_scangle_other 7.914 r_dihedral_angle_1_deg 6.224 r_scbond_it 6.078 r_scbond_other 6.076 r_mcangle_it 5.975
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.078 r_dihedral_angle_4_deg 21.959 r_dihedral_angle_3_deg 15.567 r_long_range_B_refined 8.985 r_long_range_B_other 8.984 r_scangle_other 7.914 r_dihedral_angle_1_deg 6.224 r_scbond_it 6.078 r_scbond_other 6.076 r_mcangle_it 5.975 r_mcangle_other 5.974 r_mcbond_it 4.886 r_mcbond_other 4.886 r_angle_refined_deg 1.742 r_angle_other_deg 1.404 r_chiral_restr 0.083 r_bond_refined_d 0.011 r_gen_planes_refined 0.009 r_bond_other_d 0.001 r_gen_planes_other 0.001 r_nbd_refined r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_refined r_symmetry_vdw_other r_symmetry_hbond_refined r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_scangle_it r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3017 Nucleic Acid Atoms Solvent Atoms 225 Heterogen Atoms 82
Software Software Software Name Purpose REFMAC refinement PDB_EXTRACT data extraction SAINT data reduction SAINT data scaling PHASER phasing