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C-terminal domain of Insulin-like Growth Factor Binding Protein-1 isolated from human amniotic fluid
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 7.5 277 dioxane, pH 7.5, VAPOR DIFFUSION, SITTING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2 37.4
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.54 α = 90 b = 60.39 β = 90 c = 31.24 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH mirrors 2004-02-17 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE RIGAKU RU300 1.5418
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 18.92 99.5 0.041 14.2 6.2 7168 7168
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.9 98.1 0.274 2.8
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 1.8 18.92 7136 6801 335 99.3 0.235 0.2236 0.22112 0.2178 0.27503 0.2685 RANDOM 23.586
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.89 -1.57 -0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.224 r_dihedral_angle_3_deg 13.432 r_dihedral_angle_4_deg 11.129 r_dihedral_angle_1_deg 5.849 r_scangle_it 2.585 r_scbond_it 1.609 r_mcangle_it 1.226 r_angle_refined_deg 1.082 r_mcbond_it 0.731 r_nbtor_refined 0.305
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.224 r_dihedral_angle_3_deg 13.432 r_dihedral_angle_4_deg 11.129 r_dihedral_angle_1_deg 5.849 r_scangle_it 2.585 r_scbond_it 1.609 r_mcangle_it 1.226 r_angle_refined_deg 1.082 r_mcbond_it 0.731 r_nbtor_refined 0.305 r_nbd_refined 0.19 r_symmetry_vdw_refined 0.18 r_symmetry_hbond_refined 0.121 r_xyhbond_nbd_refined 0.116 r_chiral_restr 0.073 r_bond_refined_d 0.008 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 642 Nucleic Acid Atoms Solvent Atoms 42 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement MAR345 data collection AUTOMAR data reduction SHARP phasing