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The structure of human mitochondrial 2-enoyl thioester reductase (CGI-63)
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1GU7
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 1.6M Ammonium Sulphate, 0.16M SODIUM CHLORIDE, 0.08M Sodium Cacodylate , pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.6 65.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.19 α = 90 b = 117.184 β = 90 c = 127.372 γ = 90
Symmetry Space Group I 2 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2005-05-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON SLS BEAMLINE X10SA 0.984 SLS X10SA
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.75 44.6 99.1 0.128 0.113 12.2 4.6 55668 55668 20.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.75 1.84 100 0.492 0.435 3 4.6 8171
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1GU7 1.75 39.9 52854 52854 2813 98.97 0.17104 0.17104 0.16974 0.1731 0.195 0.196 RANDOM 23.224
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.02 0.69 0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.869 r_dihedral_angle_4_deg 16.592 r_dihedral_angle_3_deg 13.138 r_scangle_it 7.559 r_dihedral_angle_1_deg 5.533 r_scbond_it 5.15 r_mcangle_it 2.924 r_mcbond_it 1.888 r_angle_refined_deg 1.419 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.869 r_dihedral_angle_4_deg 16.592 r_dihedral_angle_3_deg 13.138 r_scangle_it 7.559 r_dihedral_angle_1_deg 5.533 r_scbond_it 5.15 r_mcangle_it 2.924 r_mcbond_it 1.888 r_angle_refined_deg 1.419 r_nbtor_refined 0.307 r_nbd_refined 0.21 r_symmetry_vdw_refined 0.164 r_symmetry_hbond_refined 0.148 r_xyhbond_nbd_refined 0.143 r_chiral_restr 0.102 r_bond_refined_d 0.013 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2604 Nucleic Acid Atoms Solvent Atoms 345 Heterogen Atoms 23
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling PHASER phasing