1ZLH

Crystal structure of the tick carboxypeptidase inhibitor in complex with bovine carboxypeptidase A


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP6.52930.2M sodium cacodylate, 0.2M zinc acetate dihydrate, 7%(w/v) PEG 8000, 10%(w/v) dried dioxan, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293.0K
Crystal Properties
Matthews coefficientSolvent content
2.140.8

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 47.07α = 90
b = 68.6β = 104.72
c = 57.89γ = 90
Symmetry
Space GroupP 1 21 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMAR scanner 345 mm platemirror2004-02-07MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.6730870.063.7392653417622
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.671.861.50.1343786

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMIRTHROUGHOUT1.755.923926534435183292.440.15970.155610.154030.18532RANDOM12.551
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.650.24-0.26-0.26
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.631
r_scangle_it1.763
r_sphericity_free1.309
r_angle_refined_deg1.12
r_scbond_it1.118
r_mcangle_it0.843
r_angle_other_deg0.778
r_sphericity_bonded0.626
r_rigid_bond_restr0.618
r_mcbond_it0.467
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.631
r_scangle_it1.763
r_sphericity_free1.309
r_angle_refined_deg1.12
r_scbond_it1.118
r_mcangle_it0.843
r_angle_other_deg0.778
r_sphericity_bonded0.626
r_rigid_bond_restr0.618
r_mcbond_it0.467
r_nbd_other0.24
r_symmetry_vdw_other0.225
r_nbd_refined0.192
r_symmetry_vdw_refined0.178
r_xyhbond_nbd_refined0.174
r_symmetry_hbond_refined0.12
r_nbtor_other0.083
r_chiral_restr0.064
r_metal_ion_refined0.023
r_bond_refined_d0.007
r_gen_planes_refined0.004
r_bond_other_d0.002
r_gen_planes_other0.002
r_dihedral_angle_2_deg
r_dihedral_angle_3_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_xyhbond_nbd_other
r_metal_ion_other
r_symmetry_hbond_other
r_symmetry_metal_ion_refined
r_symmetry_metal_ion_other
r_mcbond_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2901
Nucleic Acid Atoms
Solvent Atoms379
Heterogen Atoms5

Software

Software
Software NamePurpose
REFMACrefinement
MAR345data collection
XDSdata scaling
MOLREPphasing