☰ Navigation Tabs
Crystal structure of ribonuclease mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1RGG PDB entry 1rgg
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.4 293 ammonium sulfate, Hepes, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2 37.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 34.582 α = 90 b = 41.513 β = 90 c = 58.403 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 AREA DETECTOR MARRESEARCH mirrors 2003-10-02 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X31 1.096 EMBL/DESY, HAMBURG X31
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.12 33.9 97.2 0.053 31 5.3 32158 11.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.12 1.13 85 0.306 2.7 2.3 497
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT PDB entry 1rgg 1.13 33.9 32156 29977 1595 98.01 0.12942 0.12754 0.16395 0.1872 RANDOM 9.273
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.16 -0.05 -0.11
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.9 r_sphericity_free 6.256 r_sphericity_bonded 4.086 r_scangle_it 3.746 r_scbond_it 2.931 r_mcangle_it 2.471 r_angle_other_deg 2.19 r_angle_refined_deg 2.103 r_mcbond_it 1.774 r_rigid_bond_restr 1.611
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.9 r_sphericity_free 6.256 r_sphericity_bonded 4.086 r_scangle_it 3.746 r_scbond_it 2.931 r_mcangle_it 2.471 r_angle_other_deg 2.19 r_angle_refined_deg 2.103 r_mcbond_it 1.774 r_rigid_bond_restr 1.611 r_symmetry_vdw_other 0.337 r_nbd_refined 0.309 r_nbd_other 0.251 r_xyhbond_nbd_refined 0.24 r_symmetry_vdw_refined 0.235 r_symmetry_hbond_refined 0.206 r_chiral_restr 0.16 r_nbtor_other 0.087 r_bond_refined_d 0.032 r_gen_planes_other 0.029 r_gen_planes_refined 0.016 r_bond_other_d 0.004 r_dihedral_angle_2_deg r_dihedral_angle_3_deg r_dihedral_angle_4_deg r_nbtor_refined r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 759 Nucleic Acid Atoms Solvent Atoms 234 Heterogen Atoms 15
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling MOLREP phasing