☰ Navigation Tabs
Crystal structure of RV2827C protein from Mycobacterium tuberculosis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.7 277 0.1 M SODIUM ACETATE, 2 M SODIUM FORMATE, pH 4.7, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.1 42.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 87.419 α = 90 b = 180.653 β = 90 c = 35.112 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH mirrors 2004-12-04 M SINGLE WAVELENGTH 2 1 x-ray CCD MARRESEARCH mirrors 2005-02-19 M MAD 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X13 EMBL/DESY, HAMBURG X13 2 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE BW7A 0.9195,0.9203,0.9095 EMBL/DESY, HAMBURG BW7A
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.93 50 99.9 0.076 23.3 6.2 43052 43052 -3 -3
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.93 2 99.8 0.495 3.7 5.9 4214
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.93 30 41592 41592 1341 99.87 0.18269 0.18269 0.18136 0.1829 0.22455 0.2262 RANDOM 26.881
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 1.06 -2 0.93
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.97 r_dihedral_angle_4_deg 19.117 r_dihedral_angle_3_deg 14.135 r_dihedral_angle_1_deg 5.511 r_scangle_it 5.168 r_scbond_it 3.324 r_mcangle_it 1.518 r_angle_refined_deg 1.376 r_mcbond_it 0.821 r_nbtor_refined 0.312
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 28.97 r_dihedral_angle_4_deg 19.117 r_dihedral_angle_3_deg 14.135 r_dihedral_angle_1_deg 5.511 r_scangle_it 5.168 r_scbond_it 3.324 r_mcangle_it 1.518 r_angle_refined_deg 1.376 r_mcbond_it 0.821 r_nbtor_refined 0.312 r_nbd_refined 0.217 r_symmetry_vdw_refined 0.178 r_symmetry_hbond_refined 0.167 r_xyhbond_nbd_refined 0.154 r_metal_ion_refined 0.13 r_symmetry_metal_ion_refined 0.106 r_chiral_restr 0.092 r_bond_refined_d 0.012 r_gen_planes_refined 0.005
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 4534 Nucleic Acid Atoms Solvent Atoms 340 Heterogen Atoms 63
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling SHELXD phasing MLPHARE phasing DM phasing