☰ Navigation Tabs
Crystal structure of the Mud1 UBA domain
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8.5 294 sodium formate, pH 8.5, VAPOR DIFFUSION, SITTING DROP, temperature 294K
Crystal Properties Matthews coefficient Solvent content 3.2 61
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.601 α = 90 b = 60.601 β = 90 c = 96.35 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARRESEARCH 2003-08-02 M SINGLE WAVELENGTH 2 1 x-ray 100 CCD MARRESEARCH 2003-08-01 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ESRF BEAMLINE BM14 1.771 ESRF BM14 2 SYNCHROTRON ESRF BEAMLINE ID14-3 0.931 ESRF ID14-3
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.8 28.868 99.79 0.05 0.05 10.1 10.3 10214 10214 1 28.041
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.8 1.9 99.79 0.444 0.444 1.7 10.6 1449
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.8 21.89 2 10212 9954 480 99.79 0.16801 0.16801 0.16659 0.1807 0.19593 0.2045 RANDOM 21.664
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.52 0.26 0.52 -0.78
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.677 r_dihedral_angle_3_deg 14.187 r_sphericity_free 5.963 r_scangle_it 3.748 r_angle_other_deg 3.716 r_dihedral_angle_1_deg 3.458 r_scbond_it 2.51 r_sphericity_bonded 1.847 r_mcangle_it 1.504 r_angle_refined_deg 1.221
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 44.677 r_dihedral_angle_3_deg 14.187 r_sphericity_free 5.963 r_scangle_it 3.748 r_angle_other_deg 3.716 r_dihedral_angle_1_deg 3.458 r_scbond_it 2.51 r_sphericity_bonded 1.847 r_mcangle_it 1.504 r_angle_refined_deg 1.221 r_rigid_bond_restr 1.201 r_mcbond_other 1.102 r_mcbond_it 0.935 r_nbd_refined 0.285 r_symmetry_hbond_refined 0.215 r_xyhbond_nbd_refined 0.212 r_nbd_other 0.209 r_nbtor_refined 0.176 r_symmetry_vdw_other 0.134 r_nbtor_other 0.106 r_symmetry_vdw_refined 0.102 r_chiral_restr 0.073 r_bond_refined_d 0.01 r_gen_planes_other 0.008 r_gen_planes_refined 0.005 r_bond_other_d
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 569 Nucleic Acid Atoms Solvent Atoms 95 Heterogen Atoms
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling SHELXD phasing REFMAC refinement CCP4 data scaling