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Crystal Structure of the Conserved Hypothetical Protein, Methyltransferase from Streptococcus pneumoniae TIGR4
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.5 289 Citrate, PEG3000, pH 5.5, VAPOR DIFFUSION, SITTING DROP, temperature 289K
Crystal Properties Matthews coefficient Solvent content 2.7 54
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 165.613 α = 90 b = 41.253 β = 111.87 c = 78.658 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 mirrors 2005-02-22 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9793 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.02 36.5 96.8 0.07 8.5 3.2 32537 31802
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.02 2.09 74.5 0.194 3 2.5 2390
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.02 36.5 30181 30181 1621 97.14 0.18051 0.18051 0.17901 0.1772 0.20798 0.2069 RANDOM 34.733
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.01 1.05 -0.02 1.81
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.393 r_dihedral_angle_3_deg 15.593 r_dihedral_angle_4_deg 15.42 r_dihedral_angle_1_deg 5.574 r_scangle_it 3.137 r_scbond_it 2.077 r_mcangle_it 1.429 r_angle_refined_deg 1.28 r_mcbond_it 0.894 r_symmetry_hbond_refined 0.238
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.393 r_dihedral_angle_3_deg 15.593 r_dihedral_angle_4_deg 15.42 r_dihedral_angle_1_deg 5.574 r_scangle_it 3.137 r_scbond_it 2.077 r_mcangle_it 1.429 r_angle_refined_deg 1.28 r_mcbond_it 0.894 r_symmetry_hbond_refined 0.238 r_symmetry_vdw_refined 0.218 r_nbd_refined 0.194 r_xyhbond_nbd_refined 0.173 r_chiral_restr 0.112 r_bond_refined_d 0.012 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_refined r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3340 Nucleic Acid Atoms Solvent Atoms 344 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data scaling HKL-3000 phasing