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Crystal structure of the lipase/acylhydrolase from Enterococcus faecalis
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6 298 30% PEG6000, 0.1M MES, pH 6.0, VAPOR DIFFUSION, SITTING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2.013 36.55
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 45.924 α = 90 b = 45.924 β = 90 c = 148.034 γ = 120
Symmetry Space Group P 32 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 mirrors 2005-02-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.9795 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.8 50 97.1 0.113 17.09 6.3 15100 2 2 25.5
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.8 1.86 74.7 0.337 1.6 2.3 3230
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.9 49.33 14342 14247 752 99.34 0.18621 0.18355 0.1817 0.23901 0.2383 RANDOM 25.495
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.68 0.34 0.68 -1.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.238 r_dihedral_angle_3_deg 13.665 r_dihedral_angle_4_deg 11.859 r_dihedral_angle_1_deg 5.328 r_scangle_it 3.18 r_scbond_it 1.949 r_angle_refined_deg 1.13 r_mcangle_it 1.022 r_mcbond_it 0.689 r_nbtor_refined 0.304
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 41.238 r_dihedral_angle_3_deg 13.665 r_dihedral_angle_4_deg 11.859 r_dihedral_angle_1_deg 5.328 r_scangle_it 3.18 r_scbond_it 1.949 r_angle_refined_deg 1.13 r_mcangle_it 1.022 r_mcbond_it 0.689 r_nbtor_refined 0.304 r_nbd_refined 0.207 r_symmetry_vdw_refined 0.171 r_xyhbond_nbd_refined 0.141 r_symmetry_hbond_refined 0.139 r_chiral_restr 0.073 r_bond_refined_d 0.01 r_gen_planes_refined 0.004
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1502 Nucleic Acid Atoms Solvent Atoms 263 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement SBC-Collect data collection HKL-2000 data scaling