1YFB
The solution structure of the N-domain of the transcription factor abrB
SOLUTION NMR
NMR Experiment | ||||||||
---|---|---|---|---|---|---|---|---|
Experiment | Type | Sample Contents | Solvent | Ionic Strength | pH | Pressure | Temperature (K) | Spectrometer |
1 | 3D_15N-separated_NOESY | 0.5mM AbrB-N U-15N; 20mM phosphate buffer; 80mM KCl | 90% H2O/10% D2O | 80mM | 5.8 | AMBIENT | 305 | |
2 | 2D NOESY | 0.5mM AbrB-N; 20mM phosphate buffer; 80mM KCl | 90% H2O/10% D2O | 80mM | 5.8 | AMBIENT | 305 | |
3 | HNHA | 0.5mM AbrB-N U-15N; 20mM phosphate buffer; 80mM KCl | 90% H2O/10% D2O | 80mM | 5.8 | AMBIENT | 305 | |
4 | 13C-filtered/edited NOESY | 0.25mM AbrB-N U-15N, 0.25mM AbrB-N U-13C; 20mM phosphate buffer; 80mM KCl | 90% H2O/10% D2O | 80mM | 5.8 | AMBIENT | 305 |
NMR Spectrometer Information | |||
---|---|---|---|
Spectrometer | Manufacturer | Model | Field Strength |
1 | Bruker | DMX | 600 |
2 | Bruker | DMX | 750 |
3 | Bruker | DMX | 900 |
NMR Refinement | ||
---|---|---|
Method | Details | Software |
simulated annealing | X-PLOR |
NMR Ensemble Information | |
---|---|
Conformer Selection Criteria | minimized average structure |
Conformers Calculated Total Number | 50 |
Conformers Submitted Total Number | 1 |
Representative Model | 1 (minimized average structure) |
Computation: NMR Software | ||||
---|---|---|---|---|
# | Classification | Version | Software Name | Author |
1 | structure solution | X-PLOR | NIH-2.9.7 | BRUNGER, A.T. |
2 | collection | XwinNMR | 3.5 | Bruker |
3 | processing | XwinNMR | 3.5 | Bruker |
4 | data analysis | NMRView | 5.0.15 | Johnson, B.A. |
5 | refinement | X-PLOR | NIH-2.9.7 | BRUNGER, A.T. |