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Cyto-Epsl: The Cytoplasmic Domain Of Epsl, An Inner Membrane Component Of The Type II Secretion System Of Vibrio Cholerae
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1W97
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 8 293 15% PEG 6000, 150mM calcium acetate, 100mM tris pH 8, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.5 51.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 61.006 α = 90 b = 88.707 β = 106.01 c = 55.371 γ = 90
Symmetry Space Group C 1 2 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 315 2003-03-29 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97951 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.74 20 95.8 0.08 15.1 7 7122 7122 87.4
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2.74 2.8 81 0.37 0.37 3.4 5.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1w97 2.75 20 7112 6747 353 95.96 0.21553 0.21553 0.21299 0.2074 0.26881 0.2675 RANDOM 76.835
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 3.83 9.68 -0.23 1.73
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.163 r_dihedral_angle_4_deg 19.68 r_dihedral_angle_3_deg 18.654 r_dihedral_angle_1_deg 5.529 r_angle_refined_deg 1.038 r_scangle_it 0.749 r_scbond_it 0.463 r_mcangle_it 0.428 r_symmetry_vdw_refined 0.297 r_nbtor_refined 0.296
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.163 r_dihedral_angle_4_deg 19.68 r_dihedral_angle_3_deg 18.654 r_dihedral_angle_1_deg 5.529 r_angle_refined_deg 1.038 r_scangle_it 0.749 r_scbond_it 0.463 r_mcangle_it 0.428 r_symmetry_vdw_refined 0.297 r_nbtor_refined 0.296 r_mcbond_it 0.265 r_nbd_refined 0.191 r_symmetry_hbond_refined 0.19 r_xyhbond_nbd_refined 0.108 r_chiral_restr 0.061 r_bond_refined_d 0.006 r_gen_planes_refined 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1864 Nucleic Acid Atoms Solvent Atoms 9 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling MOLREP phasing