☰ Navigation Tabs
Structure of the BRCT repeats of BRCA1 bound to a CtIP phosphopeptide.
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1T15 pdb entry 1T15
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.5 293 AMMONIUM SULPHATE, pH 6.5, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 4.5 72.46
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 113.118 α = 90 b = 113.118 β = 90 c = 121.876 γ = 120
Symmetry Space Group P 61 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2004-11-10 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X12B 1.0000 NSLS X12B
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.5 20 99.1 0.133 17.53 11 16294 47.2
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.5 2.59 99.4 0.372 2.68 6.4 1593
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT pdb entry 1T15 2.5 19.59 16399 15278 1008 99.31 0.2337 0.236 0.2337 0.2326 0.2696 0.272 RANDOM 53.275
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.34 -0.17 -0.34 0.51
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.937 r_dihedral_angle_3_deg 19.001 r_dihedral_angle_4_deg 17.557 r_dihedral_angle_1_deg 7.927 r_scangle_it 3.17 r_scbond_it 1.894 r_angle_refined_deg 1.781 r_mcangle_it 1.679 r_mcbond_it 0.947 r_symmetry_vdw_refined 0.435
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 43.937 r_dihedral_angle_3_deg 19.001 r_dihedral_angle_4_deg 17.557 r_dihedral_angle_1_deg 7.927 r_scangle_it 3.17 r_scbond_it 1.894 r_angle_refined_deg 1.781 r_mcangle_it 1.679 r_mcbond_it 0.947 r_symmetry_vdw_refined 0.435 r_nbtor_refined 0.329 r_nbd_refined 0.264 r_xyhbond_nbd_refined 0.188 r_chiral_restr 0.117 r_symmetry_hbond_refined 0.099 r_bond_refined_d 0.016 r_gen_planes_refined 0.006
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1786 Nucleic Acid Atoms Solvent Atoms 48 Heterogen Atoms 6
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling PHASER phasing