1Y8J

Crystal Structure of human NEP complexed with an imidazo[4,5-c]pyridine inhibitor


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROPVAPOR DIFFUSION, HANGING DROP
Crystal Properties
Matthews coefficientSolvent content
2.3547.72

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 107.355α = 90
b = 107.356β = 90
c = 112.466γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCH2003-08-13MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEENRAF-NONIUS FR591

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.252095.434323
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.252.3984.9

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB entry 1DMT2.252032573173295.460.226390.229840.226390.29637RANDOM27.668
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.320.160.32-0.48
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg24.031
r_dihedral_angle_1_deg9.083
r_scangle_it2.951
r_mcangle_it2.933
r_scbond_it1.925
r_mcbond_it1.899
r_angle_refined_deg0.889
r_nbtor_other0.749
r_symmetry_vdw_refined0.664
r_angle_other_deg0.552
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_3_deg24.031
r_dihedral_angle_1_deg9.083
r_scangle_it2.951
r_mcangle_it2.933
r_scbond_it1.925
r_mcbond_it1.899
r_angle_refined_deg0.889
r_nbtor_other0.749
r_symmetry_vdw_refined0.664
r_angle_other_deg0.552
r_symmetry_hbond_refined0.472
r_symmetry_vdw_other0.437
r_nbd_refined0.299
r_nbd_other0.278
r_xyhbond_nbd_refined0.208
r_xyhbond_nbd_other0.182
r_metal_ion_refined0.161
r_chiral_restr0.047
r_bond_refined_d0.007
r_gen_planes_refined0.003
r_gen_planes_other0.002
r_bond_other_d0.001
r_dihedral_angle_2_deg
r_dihedral_angle_4_deg
r_nbtor_refined
r_metal_ion_other
r_symmetry_hbond_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms5595
Nucleic Acid Atoms
Solvent Atoms212
Heterogen Atoms66

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling