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Structure of gene product AF1437 from Archaeoglobus fulgidus
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7.5 298 HEPES, MgCl2, PEG 3350, Glycerol , pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 298K
Crystal Properties Matthews coefficient Solvent content 2 38.6
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 74.9 α = 90 b = 84.027 β = 90 c = 44.175 γ = 90
Symmetry Space Group P 21 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 110 CCD CUSTOM-MADE SBC3 2004-10-10 M SINGLE WAVELENGTH 2 1 x-ray 110 CCD CUSTOM-MADE SBC3 2004-04-18 M SINGLE WAVELENGTH 1,2 1
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 0.97944 APS 19-BM 2 SYNCHROTRON APS BEAMLINE 19-BM 0.97951 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1,2 1.4 36.64 96 53385 53385
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1,2 1.4 1.45 70.2
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 1.4 36.64 53377 50667 2710 96.04 0.18479 0.18278 0.1808 0.2227 0.2209 RANDOM 19.051
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.71 -0.17 -0.54
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.682 r_dihedral_angle_4_deg 16.676 r_dihedral_angle_3_deg 14.237 r_dihedral_angle_1_deg 5.097 r_scangle_it 3.062 r_scbond_it 1.938 r_angle_refined_deg 1.159 r_mcangle_it 1.126 r_mcbond_it 0.696 r_nbtor_refined 0.307
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 36.682 r_dihedral_angle_4_deg 16.676 r_dihedral_angle_3_deg 14.237 r_dihedral_angle_1_deg 5.097 r_scangle_it 3.062 r_scbond_it 1.938 r_angle_refined_deg 1.159 r_mcangle_it 1.126 r_mcbond_it 0.696 r_nbtor_refined 0.307 r_nbd_refined 0.202 r_symmetry_vdw_refined 0.142 r_symmetry_hbond_refined 0.135 r_xyhbond_nbd_refined 0.109 r_chiral_restr 0.077 r_bond_refined_d 0.009 r_gen_planes_refined 0.005 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_symmetry_metal_ion_refined r_symmetry_metal_ion_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 2459 Nucleic Acid Atoms Solvent Atoms 409 Heterogen Atoms 1
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SHELXD phasing MLPHARE phasing autoSHARP phasing