1Y83

T-To-T(High) quaternary transitions in human hemoglobin: betaY145G deoxy low-salt (1 test set)


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1batch729810% PEG 6000, 10 mM potassium phosphate, 100 mM potassium chloride, 3 mM sodium dithionite, 10 mg/ml Hb, pH 7.0, batch, temperature 298K
Crystal Properties
Matthews coefficientSolvent content
2.5752.19

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 97.2α = 90
b = 99.5β = 90
c = 65.9γ = 90
Symmetry
Space GroupP 21 21 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray177IMAGE PLATERIGAKU RAXIS IVOSMIC MIRRORS2001-06-06MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU2001.5418

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.925.288.90.03417.83.545165
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.92.0563.70.0966.82.76563

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Cut-off Sigma (F)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1Y0T1.91024401343990303988.90.1950.248MATCHED TO PDB ENTRY 1Y0T23.47
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor32.4
p_staggered_tor20.2
p_scangle_it6.661
p_scbond_it5.099
p_mcangle_it2.979
p_planar_tor2.4
p_mcbond_it2.267
p_multtor_nbd0.169
p_xyhbond_nbd0.164
p_singtor_nbd0.162
RMS Deviations
KeyRefinement Restraint Deviation
p_transverse_tor32.4
p_staggered_tor20.2
p_scangle_it6.661
p_scbond_it5.099
p_mcangle_it2.979
p_planar_tor2.4
p_mcbond_it2.267
p_multtor_nbd0.169
p_xyhbond_nbd0.164
p_singtor_nbd0.162
p_chiral_restr0.141
p_hb_or_metal_coord0.122
p_planar_d0.038
p_angle_d0.025
p_bond_d0.011
p_plane_restr0.011
p_angle_deg
p_xhyhbond_nbd
p_orthonormal_tor
p_special_tor
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms4370
Nucleic Acid Atoms
Solvent Atoms194
Heterogen Atoms172

Software

Software
Software NamePurpose
MOSFLMdata reduction
SCALAdata scaling
X-PLORmodel building
PROLSQrefinement
CCP4data scaling
X-PLORphasing