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Initial crystal structural analysis of a probable kinase from Leishmania major Friedlin
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 6.2 293 PEG20000, MES, MnCl2, HEPES, NaCl, Glycerol, pH 6.2, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.63 53
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 107.116 α = 90 b = 107.116 β = 90 c = 35.216 γ = 90
Symmetry Space Group P 4 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 210 2004-08-06 M MAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.1 0.9198, 0.8856, 0.9202 ALS 8.2.1
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.55 38 99.2 0.06 14.5 6 30440 30411 -3 19.137
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.55 1.63 94.8 0.564 2 3.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MAD THROUGHOUT 1.7 38 21985 21985 1181 99.87 0.1665 0.1665 0.16492 0.1798 0.19621 0.2105 RANDOM 21.038
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.16 -0.16 0.33
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.532 r_dihedral_angle_4_deg 16.196 r_dihedral_angle_3_deg 12.775 r_scangle_it 5.249 r_dihedral_angle_1_deg 4.991 r_scbond_it 3.369 r_mcangle_it 2.893 r_mcbond_it 1.855 r_angle_refined_deg 1.467 r_angle_other_deg 0.83
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 31.532 r_dihedral_angle_4_deg 16.196 r_dihedral_angle_3_deg 12.775 r_scangle_it 5.249 r_dihedral_angle_1_deg 4.991 r_scbond_it 3.369 r_mcangle_it 2.893 r_mcbond_it 1.855 r_angle_refined_deg 1.467 r_angle_other_deg 0.83 r_mcbond_other 0.584 r_metal_ion_refined 0.303 r_symmetry_vdw_other 0.298 r_symmetry_vdw_refined 0.297 r_nbd_refined 0.226 r_symmetry_hbond_refined 0.216 r_nbd_other 0.188 r_nbtor_refined 0.176 r_chiral_restr 0.082 r_nbtor_other 0.082 r_bond_refined_d 0.011 r_gen_planes_refined 0.006 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1366 Nucleic Acid Atoms Solvent Atoms 157 Heterogen Atoms 42
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling SHARP phasing