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Lipoxygenase-1 (Soybean) at 100K, N694G Mutant
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1F8N
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, SITTING DROP 5.2 293 50 mM Na acetate pH 5.2; 14% w/v PEG 3350, pH 5.20, VAPOR DIFFUSION, SITTING DROP, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.3 45.7
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 93.884 α = 90 b = 92.835 β = 90.66 c = 49.435 γ = 90
Symmetry Space Group P 1 21 1
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD SBC-3 MIRRORS 2003-10-12 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-BM 1.03106 APS 19-BM
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.95 50 95.9 0.044 21.3339 2.8 60260 60260 -3 31.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.95 2.02 91 0.333 3.077 2.7 5679
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION ISOMORPHOUS REPLACEMENT THROUGHOUT 1F8N 1.95 33.84 56381 56381 3009 96.08 0.204 0.18257 0.17988 0.1876 0.23243 0.2373 RANDOM 24.842
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.01 0.02
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.12 r_dihedral_angle_4_deg 16.492 r_dihedral_angle_3_deg 13.363 r_dihedral_angle_1_deg 6.487 r_scangle_it 3.645 r_scbond_it 2.552 r_angle_refined_deg 1.678 r_mcangle_it 1.595 r_mcbond_it 1.198 r_angle_other_deg 0.88
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 32.12 r_dihedral_angle_4_deg 16.492 r_dihedral_angle_3_deg 13.363 r_dihedral_angle_1_deg 6.487 r_scangle_it 3.645 r_scbond_it 2.552 r_angle_refined_deg 1.678 r_mcangle_it 1.595 r_mcbond_it 1.198 r_angle_other_deg 0.88 r_symmetry_vdw_refined 0.283 r_mcbond_other 0.283 r_symmetry_vdw_other 0.265 r_nbd_refined 0.225 r_symmetry_hbond_refined 0.212 r_nbd_other 0.2 r_nbtor_refined 0.189 r_xyhbond_nbd_refined 0.175 r_chiral_restr 0.104 r_nbtor_other 0.088 r_bond_refined_d 0.019 r_gen_planes_refined 0.007 r_bond_other_d 0.005 r_gen_planes_other 0.001 r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 6502 Nucleic Acid Atoms Solvent Atoms 676 Heterogen Atoms 13
Software Software Software Name Purpose HKL-2000 data collection HKL-2000 data reduction REFMAC refinement HKL-2000 data reduction HKL-2000 data scaling CNS phasing