1Y1F | pdb_00001y1f

human formylglycine generating enzyme with cysteine sulfenic acid

X-RAY DIFFRACTION

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Crystallization

Crystal Properties
Matthews coefficient	Solvent content
2.1	41.57

Crystal Data

Unit Cell
Length ( Å )	Angle ( ˚ )
a = 61.754	α = 90
b = 109.692	β = 90
c = 43.411	γ = 90

Symmetry
Space Group	P 21 21 2

Diffraction

Diffraction Experiment
ID #	Crystal ID	Scattering Type	Data Collection Temperature	Detector	Detector Type	Details	Collection Date	Monochromator	Protocol
1	1	x-ray						M	SINGLE WAVELENGTH

Data Collection

Overall
ID #	Resolution (High)	Resolution (Low)	Percent Possible (Observed)	R Sym I (Observed)	Net I Over Average Sigma (I)	Redundancy	Number Reflections (All)	Number Reflections (Observed)	Observed Criterion Sigma (F)	Observed Criterion Sigma (I)	B (Isotropic) From Wilson Plot
1	1.8	29.8	89.7	0.076	23.2	4.3		25226

Highest Resolution Shell
ID #	Resolution (High)	Resolution (Low)	Percent Possible (All)	Percent Possible (Observed)	R-Sym I (Observed)	Mean I Over Sigma (Observed)	Redundancy	Number Unique Reflections (All)
1	1.8	1.86			0.191	3.5	1.5	891

Refinement

Statistics
Diffraction ID	Structure Solution Method	Cross Validation method	Resolution (High)	Resolution (Low)	Number Reflections (Observed)	Number Reflections (R-Free)	Percent Reflections (Observed)	R-Factor (Observed)	R-Work (Depositor)	R-Work (DCC)	R-Free (Depositor)	R-Free (DCC)	R-Free Selection Details	Mean Isotropic B
X-RAY DIFFRACTION	MOLECULAR REPLACEMENT	THROUGHOUT	1.8	29.75	23261	1187	97.08	0.15023	0.14806	0.1597	0.19361	0.202	RANDOM	12.59

Temperature Factor Modeling
Anisotropic B[1][1]	Anisotropic B[1][2]	Anisotropic B[1][3]	Anisotropic B[2][2]	Anisotropic B[2][3]	Anisotropic B[3][3]
-0.24			0.22		0.02

RMS Deviations
Key	Refinement Restraint Deviation
r_dihedral_angle_2_deg	32.573
r_dihedral_angle_4_deg	17.418
r_dihedral_angle_1_deg	14.309
r_dihedral_angle_3_deg	13.208
r_scangle_it	2.84
r_scbond_it	1.938
r_angle_refined_deg	1.412
r_mcangle_it	1.326
r_mcbond_it	0.939
r_angle_other_deg	0.935
r_symmetry_vdw_other	0.262
r_mcbond_other	0.218
r_nbd_refined	0.212
r_symmetry_vdw_refined	0.202
r_nbd_other	0.201
r_xyhbond_nbd_refined	0.196
r_symmetry_hbond_refined	0.195
r_nbtor_refined	0.183
r_metal_ion_refined	0.097
r_nbtor_other	0.086
r_chiral_restr	0.082
r_bond_refined_d	0.013
r_gen_planes_refined	0.006
r_bond_other_d	0.001
r_gen_planes_other	0.001

Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen Atoms	Number
Protein Atoms	2163
Nucleic Acid Atoms
Solvent Atoms	429
Heterogen Atoms	30

Software

Software
Software Name	Purpose
REFMAC	refinement