1Y11

Mycobacterial adenylyl cyclase Rv1264, holoenzyme, active state


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.5291Lithium sulphate, TRIS, PEG 400, GTP, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
3.261.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 114.114α = 90
b = 114.114β = 90
c = 151.771γ = 120
Symmetry
Space GroupP 62 2 2

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARRESEARCH2003-11-25MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID130.9755ESRFID13

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
13.33092.50.1076.12.692218526-4-464.1
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
13.33.4881.20.3112.62.41061

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTRv1264 RESIDUES 1-207 (to be deposited)3.3259267850340891.750.237560.237560.234540.29941RANDOM53.558
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.870.941.87-2.81
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.817
r_dihedral_angle_3_deg23.172
r_dihedral_angle_4_deg19.765
r_dihedral_angle_1_deg8.87
r_scangle_it3.352
r_scbond_it2.019
r_angle_refined_deg1.535
r_mcangle_it1.09
r_mcbond_it0.703
r_symmetry_hbond_refined0.446
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg39.817
r_dihedral_angle_3_deg23.172
r_dihedral_angle_4_deg19.765
r_dihedral_angle_1_deg8.87
r_scangle_it3.352
r_scbond_it2.019
r_angle_refined_deg1.535
r_mcangle_it1.09
r_mcbond_it0.703
r_symmetry_hbond_refined0.446
r_symmetry_vdw_refined0.369
r_nbtor_refined0.315
r_nbd_refined0.266
r_xyhbond_nbd_refined0.236
r_chiral_restr0.126
r_bond_refined_d0.011
r_gen_planes_refined0.005
r_bond_other_d
r_angle_other_deg
r_gen_planes_other
r_nbd_other
r_nbtor_other
r_xyhbond_nbd_other
r_metal_ion_refined
r_metal_ion_other
r_symmetry_vdw_other
r_symmetry_hbond_other
r_mcbond_other
r_rigid_bond_restr
r_sphericity_free
r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2737
Nucleic Acid Atoms
Solvent Atoms
Heterogen Atoms27

Software

Software
Software NamePurpose
REFMACrefinement
MOSFLMdata reduction
CCP4data scaling
MOLREPphasing