1XX7

Conserved hypothetical protein from Pyrococcus furiosus Pfu-403030-001


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP4.629130% v/v PEG 2000 MME, 0.2M ammonium sulfate, 0.1M ammonium acetate, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 291K
Crystal Properties
Matthews coefficientSolvent content
2.7154.68

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 98.073α = 90
b = 111.335β = 90
c = 125.984γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDMARMOSAIC 300 mm CCDMSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONAPS BEAMLINE 22-ID0.969APS22-ID

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.253099.90.06164843
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
2.252.3399.40.358

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONSADTHROUGHOUT2.26183.33364776201599.4150.2010.200980.19950.2462thin shells30.862
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.148-0.3670.218
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.553
r_dihedral_angle_4_deg19.792
r_dihedral_angle_3_deg14.472
r_dihedral_angle_1_deg5.903
r_scangle_it4.076
r_mcangle_it3.83
r_angle_other_deg3.718
r_scbond_it2.782
r_mcbond_it2.554
r_mcangle_other2.49
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg34.553
r_dihedral_angle_4_deg19.792
r_dihedral_angle_3_deg14.472
r_dihedral_angle_1_deg5.903
r_scangle_it4.076
r_mcangle_it3.83
r_angle_other_deg3.718
r_scbond_it2.782
r_mcbond_it2.554
r_mcangle_other2.49
r_scangle_other2.178
r_angle_refined_deg1.461
r_symmetry_vdw_other0.308
r_symmetry_hbond_refined0.227
r_nbd_other0.219
r_nbd_refined0.208
r_nbtor_refined0.174
r_symmetry_vdw_refined0.166
r_xyhbond_nbd_refined0.161
r_nbtor_other0.105
r_chiral_restr0.083
r_bond_refined_d0.018
r_gen_planes_other0.008
r_gen_planes_refined0.006
r_bond_other_d
r_mcbond_other
r_scbond_other
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms7728
Nucleic Acid Atoms
Solvent Atoms69
Heterogen Atoms25

Software

Software
Software NamePurpose
DENZOdata reduction
SCALEPACKdata scaling
SOLVEphasing
RESOLVEphasing
REFMACrefinement
PDB_EXTRACTdata extraction
MAR345data collection
ARP/wARPmodel building
MolProbitymodel building