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Structure Of A Cold-Adapted Family 8 Xylanase
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 7 277 MPD, sodium phosphate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.5 50.8
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 51.605 α = 90 b = 91.62 β = 90 c = 98.016 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 IMAGE PLATE MARRESEARCH 2004-03-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON EMBL/DESY, HAMBURG BEAMLINE X11 0.81 EMBL/DESY, HAMBURG X11
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.3 50 91.3 114864 104895
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1.3 1.34 84.3
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1.3 50 99620 99620 5309 91.42 0.12354 0.12354 0.1225 0.1244 0.14302 0.1227 RANDOM 11.008
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.15 0.34 -0.19
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.003 r_sphericity_free 3.434 r_scangle_it 3.067 r_sphericity_bonded 2.299 r_scbond_it 2.126 r_mcangle_it 1.602 r_angle_refined_deg 1.364 r_rigid_bond_restr 1.09 r_mcbond_it 1.043 r_angle_other_deg 1.004
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_1_deg 6.003 r_sphericity_free 3.434 r_scangle_it 3.067 r_sphericity_bonded 2.299 r_scbond_it 2.126 r_mcangle_it 1.602 r_angle_refined_deg 1.364 r_rigid_bond_restr 1.09 r_mcbond_it 1.043 r_angle_other_deg 1.004 r_symmetry_vdw_other 0.375 r_nbd_other 0.246 r_nbd_refined 0.243 r_symmetry_hbond_refined 0.185 r_xyhbond_nbd_refined 0.17 r_symmetry_vdw_refined 0.135 r_chiral_restr 0.095 r_nbtor_other 0.082 r_gen_planes_other 0.023 r_gen_planes_refined 0.016 r_bond_refined_d 0.012 r_bond_other_d 0.003
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3313 Nucleic Acid Atoms Solvent Atoms 616 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement DENZO data reduction SCALEPACK data scaling AMoRE phasing