1XWQ

Structure Of A Cold-Adapted Family 8 Xylanase


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7277MPD, sodium phosphate, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties
Matthews coefficientSolvent content
2.549.8

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 50.991α = 90
b = 90.843β = 90
c = 98.139γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMAC Science DIP-2030B2003-11-15MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODEENRAF-NONIUS FR591

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.885090.33823634526
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
1.881.9282.4

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUT1.88503252332523169690.390.161310.161310.159940.18731RANDOM15.271
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
0.02-0.150.13
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.526
r_scangle_it1.836
r_scbond_it1.158
r_angle_refined_deg1.019
r_mcangle_it0.703
r_mcbond_it0.368
r_symmetry_hbond_refined0.185
r_nbd_refined0.183
r_symmetry_vdw_refined0.172
r_xyhbond_nbd_refined0.108
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_1_deg5.526
r_scangle_it1.836
r_scbond_it1.158
r_angle_refined_deg1.019
r_mcangle_it0.703
r_mcbond_it0.368
r_symmetry_hbond_refined0.185
r_nbd_refined0.183
r_symmetry_vdw_refined0.172
r_xyhbond_nbd_refined0.108
r_chiral_restr0.078
r_bond_refined_d0.008
r_gen_planes_refined0.004
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms3256
Nucleic Acid Atoms
Solvent Atoms431
Heterogen Atoms29

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
AMoREphasing