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structure of DECD to DEAD mutation of human UAP56
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1XTI PDB ID 1XTI
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.5 290 iso-propanol, tris, pH 7.5, VAPOR DIFFUSION, HANGING DROP, temperature 290K, pH 7.50
Crystal Properties Matthews coefficient Solvent content 2.4 50
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 37.432 α = 95.57 b = 49.756 β = 101.93 c = 62.805 γ = 110.89
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD ADSC QUANTUM 4 2003-06-16 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON NSLS BEAMLINE X26C NSLS X26C
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 99 14805
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 2.4 2.49 92.9
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Cut-off Sigma (F) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ID 1XTI 2.4 50 1 15917 14660 730 0.25 0.25 0.2447 0.3 0.2506 RANDOM
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.383 -9.765 -5.024 -9.867 6.881 10.25
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.3336 c_scangle_it 2.989 c_mcangle_it 2.963 c_scbond_it 1.971 c_mcbond_it 1.694 c_angle_deg 1.298 c_improper_angle_d 0.87188 c_bond_d 0.0076 c_bond_d_na c_bond_d_prot
RMS Deviations Key Refinement Restraint Deviation c_dihedral_angle_d 23.3336 c_scangle_it 2.989 c_mcangle_it 2.963 c_scbond_it 1.971 c_mcbond_it 1.694 c_angle_deg 1.298 c_improper_angle_d 0.87188 c_bond_d 0.0076 c_bond_d_na c_bond_d_prot c_angle_d c_angle_d_na c_angle_d_prot c_angle_deg_na c_angle_deg_prot c_dihedral_angle_d_na c_dihedral_angle_d_prot c_improper_angle_d_na c_improper_angle_d_prot
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3093 Nucleic Acid Atoms Solvent Atoms 57 Heterogen Atoms 4
Software Software Software Name Purpose HKL-2000 data collection SCALEPACK data scaling AMoRE phasing CNS refinement HKL-2000 data reduction