☰ Navigation Tabs
PUTATIVE MAR1 RIBONUCLEASE FROM LEISHMANIA MAJOR
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1X9G PDB ENTRY 1X9G
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 7.2 290 16% PEG 8000, 0.1 M K2HPO4, 0.1M MOPS pH7.2, VAPOR DIFFUSION, SITTING DROP, temperature 290K, pH 7.20
Crystal Properties Matthews coefficient Solvent content 2.61 52.86
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.431 α = 90 b = 100.431 β = 90 c = 44.736 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD ADSC QUANTUM 315 2003-11-13 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON ALS BEAMLINE 8.2.2 ALS 8.2.2
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 3.8 50 99.9 0.126 3.7 2294
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 3.8 3.94 99.6 3.5
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB ENTRY 1X9G 3.8 40.86 2289 101 99.7 0.313 0.2841 0.312 0.2663 70.43
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.378 -1.378 2.756
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.844 r_dihedral_angle_3_deg 14.242 r_dihedral_angle_4_deg 10.422 r_dihedral_angle_1_deg 3.508 r_angle_refined_deg 0.893 r_nbtor_refined 0.295 r_mcangle_it 0.263 r_nbd_refined 0.177 r_symmetry_vdw_refined 0.152 r_mcbond_it 0.145
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 29.844 r_dihedral_angle_3_deg 14.242 r_dihedral_angle_4_deg 10.422 r_dihedral_angle_1_deg 3.508 r_angle_refined_deg 0.893 r_nbtor_refined 0.295 r_mcangle_it 0.263 r_nbd_refined 0.177 r_symmetry_vdw_refined 0.152 r_mcbond_it 0.145 r_xyhbond_nbd_refined 0.091 r_chiral_restr 0.054 r_scangle_it 0.036 r_symmetry_hbond_refined 0.03 r_scbond_it 0.023 r_bond_refined_d 0.006 r_gen_planes_refined 0.001 r_bond_other_d r_angle_other_deg r_gen_planes_other r_nbd_other r_nbtor_other r_xyhbond_nbd_other r_metal_ion_refined r_metal_ion_other r_symmetry_vdw_other r_symmetry_hbond_other r_mcbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 1504 Nucleic Acid Atoms Solvent Atoms Heterogen Atoms
Software Software Software Name Purpose SCALEPACK data scaling REFMAC refinement EPMR phasing