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Crystal structure of human F508A NBD1 domain with ATP
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1R0X PDB entry 1R0X
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION, HANGING DROP 4.5 277 PEG 400, glycerol, ethylene glycol, tris, pH 4.5, VAPOR DIFFUSION, HANGING DROP, temperature 277K
Crystal Properties Matthews coefficient Solvent content 2.41 48.5
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 144.461 α = 90 b = 154.022 β = 90 c = 136.088 γ = 90
Symmetry Space Group C 2 2 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray CCD MARRESEARCH M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 31-ID 0.9794 APS 31-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.9 27.524 99.8 0.128 8.3 6.8 71899 71899
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.9 2 99.4 0.017 1.1 5.8
Refinement Statistics Diffraction ID Structure Solution Method Starting model Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT PDB entry 1R0X 2.25 27.2 71897 3582 0.232 0.232 0.212 0.265 0.2651 32.205
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.232 -0.2 0.432
RMS Deviations Key Refinement Restraint Deviation r_scangle_it 7.491 r_dihedral_angle_2_deg 4.73 r_scbond_it 4.469 r_mcangle_it 2.315 r_mcbond_it 1.174 r_angle_refined_deg 0.997 r_dihedral_angle_1_deg 0.06 r_bond_refined_d 0.006 r_gen_planes_refined 0.002
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 10364 Nucleic Acid Atoms Solvent Atoms 704 Heterogen Atoms 160
Software Software Software Name Purpose MOSFLM data reduction SCALA data scaling TRUNCATE data reduction MOLREP phasing REFMAC refinement CCP4 data scaling TRUNCATE data scaling