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Crystal structure of the virulence factor YopN in complex with its heterodimeric chaperone SycN-YscB
Crystallization Crystal Properties Matthews coefficient Solvent content 2.24 44.97
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 60.718 α = 90 b = 60.718 β = 90 c = 140.419 γ = 90
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 2003-11-25 M SINGLE WAVELENGTH
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.7 60.86 55724
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Cut-off Sigma (I) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MIR THROUGHOUT 1.7 60.86 -1 52879 51811 2791 97.98 0.20059 0.20059 0.19839 0.2061 0.24197 0.249 RANDOM 33.411
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -1.32 -1.32 2.63
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.694 r_dihedral_angle_4_deg 18.16 r_dihedral_angle_3_deg 13.973 r_dihedral_angle_1_deg 5.985 r_scangle_it 3.656 r_scbond_it 2.427 r_angle_other_deg 1.531 r_angle_refined_deg 1.494 r_mcangle_it 1.459 r_mcbond_it 1.259
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 38.694 r_dihedral_angle_4_deg 18.16 r_dihedral_angle_3_deg 13.973 r_dihedral_angle_1_deg 5.985 r_scangle_it 3.656 r_scbond_it 2.427 r_angle_other_deg 1.531 r_angle_refined_deg 1.494 r_mcangle_it 1.459 r_mcbond_it 1.259 r_mcbond_other 0.247 r_nbd_refined 0.235 r_symmetry_vdw_other 0.192 r_nbd_other 0.181 r_symmetry_vdw_refined 0.176 r_nbtor_refined 0.175 r_xyhbond_nbd_refined 0.167 r_symmetry_hbond_refined 0.16 r_nbtor_other 0.101 r_chiral_restr 0.096 r_bond_refined_d 0.013 r_gen_planes_refined 0.005 r_bond_other_d 0.002 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 3773 Nucleic Acid Atoms Solvent Atoms 179 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing