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Hypothetical Protein From Pyrococcus Furiosus Pfu-880080-001
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 modified microbatch 6.5 293 1.6M magnesium sulfate, 0.1M MES, pH 6.5, modified microbatch, temperature 293K
Crystal Properties Matthews coefficient Solvent content 3.25 62.1
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 88.625 α = 90 b = 88.625 β = 90 c = 73.267 γ = 120
Symmetry Space Group P 65 2 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 100 CCD MARMOSAIC 225 mm CCD 2004-03-20 SAD
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 22-ID 1.000 APS 22-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2 50 93.7 0.068 11239
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 2 2.07 57.4 0.443
Refinement Statistics Diffraction ID Structure Solution Method Resolution (High) Resolution (Low) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (Observed) R-Work (Depositor) R-Free (Depositor) R-Free (DCC) Mean Isotropic B X-RAY DIFFRACTION SAD 2 76.696 11213 525 93.582 0.22219 0.2213 0.2397 0.249 41.428
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] 0.078 0.039 0.078 -0.117
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.922 r_dihedral_angle_4_deg 22.522 r_dihedral_angle_3_deg 18.68 r_dihedral_angle_1_deg 6.124 r_scangle_it 5.394 r_mcangle_it 4.022 r_scbond_it 3.356 r_mcbond_it 2.5 r_angle_refined_deg 1.465 r_nbtor_refined 0.302
Show All KeysRMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 39.922 r_dihedral_angle_4_deg 22.522 r_dihedral_angle_3_deg 18.68 r_dihedral_angle_1_deg 6.124 r_scangle_it 5.394 r_mcangle_it 4.022 r_scbond_it 3.356 r_mcbond_it 2.5 r_angle_refined_deg 1.465 r_nbtor_refined 0.302 r_symmetry_vdw_refined 0.209 r_nbd_refined 0.2 r_xyhbond_nbd_refined 0.145 r_chiral_restr 0.086 r_symmetry_hbond_refined 0.016 r_bond_refined_d 0.013 r_gen_planes_refined 0.005
Hide All KeysNon-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 652 Nucleic Acid Atoms Solvent Atoms 28 Heterogen Atoms 5
Software Software Software Name Purpose SOLVE phasing RESOLVE phasing DENZO data reduction SCALEPACK data scaling PDB_EXTRACT data extraction MAR345 data collection REFMAC refinement