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2.4A X-ray structure of Urocanase protein complexed with NAD
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION VAPOR DIFFUSION
Crystal Properties Matthews coefficient Solvent content 2.37 48.17
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 100.118 α = 90 b = 101.614 β = 90 c = 113.854 γ = 90
Symmetry Space Group P 21 21 21
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 150 CCD CUSTOM-MADE SBC2 2004-07-18 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 SYNCHROTRON APS BEAMLINE 19-ID 0.97945 APS 19-ID
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 2.4 50 99.4 0.073 46226 46226
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION SAD THROUGHOUT 2.4 20 43601 43601 2323 99.84 0.18886 0.1888 0.18651 0.192 0.23241 0.2382 RANDOM 46.441
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3] -0.03 -1.48 1.5
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.124 r_dihedral_angle_4_deg 20.985 r_dihedral_angle_3_deg 18.156 r_dihedral_angle_1_deg 6.391 r_scangle_it 2.955 r_scbond_it 1.942 r_angle_refined_deg 1.461 r_mcangle_it 1.211 r_mcbond_it 1.176 r_angle_other_deg 1.082
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_2_deg 34.124 r_dihedral_angle_4_deg 20.985 r_dihedral_angle_3_deg 18.156 r_dihedral_angle_1_deg 6.391 r_scangle_it 2.955 r_scbond_it 1.942 r_angle_refined_deg 1.461 r_mcangle_it 1.211 r_mcbond_it 1.176 r_angle_other_deg 1.082 r_symmetry_vdw_other 0.236 r_symmetry_hbond_refined 0.225 r_nbd_refined 0.212 r_symmetry_vdw_refined 0.196 r_nbd_other 0.182 r_xyhbond_nbd_refined 0.173 r_mcbond_other 0.145 r_chiral_restr 0.085 r_nbtor_other 0.085 r_xyhbond_nbd_other 0.061 r_bond_refined_d 0.012 r_gen_planes_refined 0.004 r_bond_other_d 0.002 r_gen_planes_other 0.001 r_nbtor_refined r_metal_ion_refined r_metal_ion_other r_symmetry_hbond_other r_rigid_bond_restr r_sphericity_free r_sphericity_bonded
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 7570 Nucleic Acid Atoms Solvent Atoms 218 Heterogen Atoms 88
Software Software Software Name Purpose REFMAC refinement HKL-2000 data reduction SCALEPACK data scaling SOLVE phasing