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Structure 4; room temperature crystal structure of truncated pak pilin from Pseudomonas aeruginosa at 1.63A resolution
Starting Model(s) Initial Refinement Model(s) Type Source Accession Code Details experimental model PDB 1DZO
Crystallization Crystalization Experiments ID Method pH Temperature Details 1 VAPOR DIFFUSION 8.2 293 60% Ammonium Sulfate, 0.1M Hepes, pH 8.2, VAPOR DIFFUSION, temperature 293K
Crystal Properties Matthews coefficient Solvent content 2.1 42.2
Crystal Data Unit Cell Length ( Å ) Angle ( ˚ ) a = 38.114 α = 90 b = 38.114 β = 90 c = 149.775 γ = 90
Symmetry Space Group P 41 21 2
Diffraction Diffraction Experiment ID # Crystal ID Scattering Type Data Collection Temperature Detector Detector Type Details Collection Date Monochromator Protocol 1 1 x-ray 273 IMAGE PLATE MAR scanner 300 mm plate SUPPER MIRROR 2000-12-15 M SINGLE WAVELENGTH
Radiation Source ID # Source Type Wavelength List Synchrotron Site Beamline 1 ROTATING ANODE ELLIOTT GX-13
Data Collection Overall ID # Resolution (High) Resolution (Low) Percent Possible (Observed) R Merge I (Observed) R Sym I (Observed) Net I Over Average Sigma (I) Redundancy Number Reflections (All) Number Reflections (Observed) Observed Criterion Sigma (F) Observed Criterion Sigma (I) B (Isotropic) From Wilson Plot 1 1.63 37.53 99.5 0.049 0.049 26.7 7.62 14500 14500 16.8
Highest Resolution Shell ID # Resolution (High) Resolution (Low) Percent Possible (All) Percent Possible (Observed) R Merge I (Observed) R-Sym I (Observed) Mean I Over Sigma (Observed) Redundancy Number Unique Reflections (All) 1 1.63 1.72 89.6 0.19 0.19 10.1
Refinement Statistics Diffraction ID Structure Solution Method Cross Validation method Starting model Resolution (High) Resolution (Low) Number Reflections (All) Number Reflections (Observed) Number Reflections (R-Free) Percent Reflections (Observed) R-Factor (All) R-Factor (Observed) R-Work (Depositor) R-Work (DCC) R-Free (Depositor) R-Free (DCC) R-Free Selection Details Mean Isotropic B X-RAY DIFFRACTION MOLECULAR REPLACEMENT THROUGHOUT 1DZO 1.63 37.53 14500 14500 751 99.5 0.14056 0.14056 0.13965 0.1524 0.15765 0.1684 RANDOM 13.17
Temperature Factor Modeling Anisotropic B[1][1] Anisotropic B[1][2] Anisotropic B[1][3] Anisotropic B[2][2] Anisotropic B[2][3] Anisotropic B[3][3]
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.686 r_dihedral_angle_1_deg 3.48 r_angle_refined_deg 1.336 r_angle_other_deg 1.239 r_xyhbond_nbd_other 0.503 r_symmetry_hbond_refined 0.259 r_xyhbond_nbd_refined 0.249 r_symmetry_vdw_refined 0.234 r_nbd_refined 0.217 r_nbd_other 0.195
RMS Deviations Key Refinement Restraint Deviation r_dihedral_angle_3_deg 15.686 r_dihedral_angle_1_deg 3.48 r_angle_refined_deg 1.336 r_angle_other_deg 1.239 r_xyhbond_nbd_other 0.503 r_symmetry_hbond_refined 0.259 r_xyhbond_nbd_refined 0.249 r_symmetry_vdw_refined 0.234 r_nbd_refined 0.217 r_nbd_other 0.195 r_symmetry_vdw_other 0.183 r_chiral_restr 0.089 r_nbtor_other 0.016 r_bond_refined_d 0.009 r_gen_planes_refined 0.004 r_bond_other_d 0.001 r_gen_planes_other 0.001
Non-Hydrogen Atoms Used in Refinement Non-Hydrogen Atoms Number Protein Atoms 846 Nucleic Acid Atoms Solvent Atoms 138 Heterogen Atoms
Software Software Software Name Purpose REFMAC refinement MOSFLM data reduction CCP4 data scaling