1X1V

Structure Of Banana Lectin- Methyl-Alpha-Mannose Complex


X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, SITTING DROP8298zinc acetate dihydrate, sodium cacodylate, 1,6-hexanediol, pH 8.0, VAPOR DIFFUSION, SITTING DROP, temperature 298.0K
Crystal Properties
Matthews coefficientSolvent content
4.773.3

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 80.82α = 90
b = 80.82β = 90
c = 148γ = 120
Symmetry
Space GroupP 32 2 1

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100IMAGE PLATEMARRESEARCHmirrors2004-07-04MSINGLE WAVELENGTH
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1ROTATING ANODERIGAKU RU2001.54

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)R Merge I (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
12.4530990.075.82185921617
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)R Merge I (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
12.452.5499.30.533

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodStarting modelResolution (High)Resolution (Low)Number Reflections (All)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (All)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMOLECULAR REPLACEMENTTHROUGHOUTPDB ENTRY 1C3N2.4524.92209691992210470.22570.22570.223880.26034RANDOM41.216
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
1.950.981.95-2.93
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.687
r_dihedral_angle_3_deg18.013
r_dihedral_angle_4_deg10.25
r_dihedral_angle_1_deg7.85
r_angle_refined_deg1.533
r_scangle_it1.37
r_angle_other_deg1.279
r_scbond_it0.888
r_mcangle_it0.69
r_mcbond_it0.591
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg33.687
r_dihedral_angle_3_deg18.013
r_dihedral_angle_4_deg10.25
r_dihedral_angle_1_deg7.85
r_angle_refined_deg1.533
r_scangle_it1.37
r_angle_other_deg1.279
r_scbond_it0.888
r_mcangle_it0.69
r_mcbond_it0.591
r_xyhbond_nbd_other0.357
r_chiral_restr0.327
r_symmetry_vdw_other0.197
r_symmetry_vdw_refined0.195
r_nbtor_refined0.186
r_nbd_refined0.185
r_nbd_other0.181
r_xyhbond_nbd_refined0.18
r_symmetry_hbond_refined0.16
r_nbtor_other0.086
r_metal_ion_refined0.083
r_mcbond_other0.069
r_bond_refined_d0.009
r_gen_planes_refined0.003
r_bond_other_d0.001
r_gen_planes_other0.001
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms2050
Nucleic Acid Atoms
Solvent Atoms498
Heterogen Atoms116

Software

Software
Software NamePurpose
REFMACrefinement
DENZOdata reduction
SCALEPACKdata scaling
PHASERphasing