X-RAY DIFFRACTION

Crystallization

Crystalization Experiments
IDMethodpHTemperatureDetails
1VAPOR DIFFUSION, HANGING DROP7.5298100mM Tris-HCl pH 7.5, 2.0M Na+/K+ tartrate, VAPOR DIFFUSION, HANGING DROP, temperature 298.0K
Crystal Properties
Matthews coefficientSolvent content
2.448

Crystal Data

Unit Cell
Length ( Å )Angle ( ˚ )
a = 39.083α = 90
b = 46.164β = 90
c = 143.377γ = 90
Symmetry
Space GroupP 21 21 21

Diffraction

Diffraction Experiment
ID #Crystal IDScattering TypeData Collection TemperatureDetectorDetector TypeDetailsCollection DateMonochromatorProtocol
11x-ray100CCDADSC QUANTUM 4MMAD
Radiation Source
ID #SourceTypeWavelength ListSynchrotron SiteBeamline
1SYNCHROTRONESRF BEAMLINE ID14-20.98, 0.9793, 0.9795, 0.9392ESRFID14-2

Data Collection

Overall
ID #Resolution (High)Resolution (Low)Percent Possible (Observed)Net I Over Average Sigma (I)RedundancyNumber Reflections (All)Number Reflections (Observed)Observed Criterion Sigma (F)Observed Criterion Sigma (I)B (Isotropic) From Wilson Plot
11.62096.3154.432044
Highest Resolution Shell
ID #Resolution (High)Resolution (Low)Percent Possible (All)Percent Possible (Observed)Mean I Over Sigma (Observed)RedundancyNumber Unique Reflections (All)
11.61.6979.2

Refinement

Statistics
Diffraction IDStructure Solution MethodCross Validation methodResolution (High)Resolution (Low)Number Reflections (Observed)Number Reflections (R-Free)Percent Reflections (Observed)R-Factor (Observed)R-WorkR-FreeR-Free Selection DetailsMean Isotropic B
X-RAY DIFFRACTIONMADTHROUGHOUT1.61532044171299.950.230140.227970.27098RANDOM26.054
Temperature Factor Modeling
Anisotropic B[1][1]Anisotropic B[1][2]Anisotropic B[1][3]Anisotropic B[2][2]Anisotropic B[2][3]Anisotropic B[3][3]
2.45-1.67-0.78
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.159
r_dihedral_angle_4_deg21.486
r_dihedral_angle_3_deg17.006
r_scangle_it6.826
r_scbond_it4.061
r_dihedral_angle_1_deg3.801
r_mcangle_it2.322
r_mcbond_it2.213
r_angle_refined_deg1.717
r_nbtor_refined0.302
RMS Deviations
KeyRefinement Restraint Deviation
r_dihedral_angle_2_deg36.159
r_dihedral_angle_4_deg21.486
r_dihedral_angle_3_deg17.006
r_scangle_it6.826
r_scbond_it4.061
r_dihedral_angle_1_deg3.801
r_mcangle_it2.322
r_mcbond_it2.213
r_angle_refined_deg1.717
r_nbtor_refined0.302
r_nbd_refined0.287
r_symmetry_vdw_refined0.256
r_xyhbond_nbd_refined0.183
r_symmetry_hbond_refined0.161
r_chiral_restr0.113
r_bond_refined_d0.019
r_gen_planes_refined0.008
Non-Hydrogen Atoms Used in Refinement
Non-Hydrogen AtomsNumber
Protein Atoms1613
Nucleic Acid Atoms
Solvent Atoms295
Heterogen Atoms

Software

Software
Software NamePurpose
REFMACrefinement
XDSdata scaling
SHARPphasing